Variant report

Variant	rs699593
Chromosome Location	chr12:63356226-63356227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63325863..63329962-chr12:63356030..63360907,6	MCF-7	breast:
2	chr12:63327950..63330130-chr12:63354441..63356488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111110	Chromatin interaction
ENSG00000252660	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1026096	1.00[ASN][1000 genomes]
rs10506470	1.00[ASN][1000 genomes]
rs1249935	1.00[ASN][1000 genomes]
rs12813083	1.00[ASN][1000 genomes]
rs12821413	1.00[ASN][1000 genomes]
rs12821849	1.00[ASN][1000 genomes]
rs12829134	1.00[ASN][1000 genomes]
rs17098568	1.00[ASN][1000 genomes]
rs17098575	1.00[ASN][1000 genomes]
rs17098581	1.00[ASN][1000 genomes]
rs17098689	1.00[ASN][1000 genomes]
rs17098761	1.00[ASN][1000 genomes]
rs17098763	1.00[ASN][1000 genomes]
rs17098774	1.00[ASN][1000 genomes]
rs17098779	1.00[ASN][1000 genomes]
rs17098789	1.00[ASN][1000 genomes]
rs17098794	1.00[ASN][1000 genomes]
rs1731661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739095	1.00[ASN][1000 genomes]
rs2464118	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884542	1.00[ASN][1000 genomes]
rs34203667	1.00[ASN][1000 genomes]
rs35910451	1.00[ASN][1000 genomes]
rs67784802	1.00[ASN][1000 genomes]
rs67994077	1.00[ASN][1000 genomes]
rs699591	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699615	1.00[ASN][1000 genomes]
rs71450600	1.00[ASN][1000 genomes]
rs71465172	1.00[ASN][1000 genomes]
rs71465180	1.00[ASN][1000 genomes]
rs71465181	1.00[ASN][1000 genomes]
rs771974	1.00[ASN][1000 genomes]
rs771976	1.00[ASN][1000 genomes]
rs772538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971730	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63353000-63357400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr12:63353400-63357000	Weak transcription	HepG2	liver
3	chr12:63356200-63357400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links