Variant report
Variant | rs7001383 |
---|---|
Chromosome Location | chr8:63965625-63965626 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10094071 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10106587 | 0.81[CEU][hapmap] |
rs11995525 | 0.82[CEU][hapmap] |
rs12679179 | 0.92[ASN][1000 genomes] |
rs12682204 | 0.90[ASN][1000 genomes] |
rs13248452 | 0.90[ASN][1000 genomes] |
rs1350058 | 0.81[AMR][1000 genomes] |
rs2198689 | 0.87[EUR][1000 genomes] |
rs2353903 | 0.88[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2736681 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs28366966 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs28429792 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs28595528 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs28816542 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs34099334 | 0.88[ASN][1000 genomes] |
rs3780126 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4546655 | 0.91[ASN][1000 genomes] |
rs4606052 | 0.88[CEU][hapmap] |
rs4739043 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4739045 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60941985 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6472067 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6472068 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6472071 | 0.84[EUR][1000 genomes] |
rs6472075 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6994076 | 0.85[CEU][hapmap] |
rs6996155 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6996325 | 0.96[CEU][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7004934 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7005322 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7007125 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7386567 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7830578 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7832731 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
2 | nsv465701 | chr8:63951237-64080486 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
3 | nsv611448 | chr8:63951237-64080486 | Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | esv2625263 | chr8:63960335-63966497 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv3480487 | chr8:63960998-63965997 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | esv3480488 | chr8:63961087-63965898 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:63960400-63967200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
2 | chr8:63960400-63972400 | Weak transcription | Liver | Liver |
3 | chr8:63964000-63967200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
4 | chr8:63965600-63966400 | Enhancers | HepG2 | liver |