Variant report

Variant	rs7003777
Chromosome Location	chr8:54401382-54401383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10097151	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10100538	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1471410	0.87[EUR][1000 genomes]
rs1477953	0.82[AMR][1000 genomes]
rs1531520	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2889303	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873750	0.85[EUR][1000 genomes]
rs4873755	0.82[AMR][1000 genomes]
rs6995863	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013700	0.82[AMR][1000 genomes]
rs7357373	0.87[EUR][1000 genomes]
rs899106	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7003777	RP11-1081M5.1	cis	Artery Aorta	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54398200-54402200	Enhancers	Fetal Heart	heart
2	chr8:54398200-54403400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:54399200-54408200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:54400000-54407400	Weak transcription	Left Ventricle	heart
5	chr8:54400200-54407600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:54400400-54401400	Enhancers	Right Ventricle	heart
7	chr8:54401000-54412600	Weak transcription	Aorta	Aorta
8	chr8:54401200-54401600	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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