Variant report

Variant	rs7004183
Chromosome Location	chr8:63625443-63625444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11989310	0.84[EUR][1000 genomes]
rs1471511	0.86[EUR][1000 genomes]
rs1471512	0.86[EUR][1000 genomes]
rs1480195	0.84[EUR][1000 genomes]
rs1600538	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16918940	0.86[EUR][1000 genomes]
rs16929414	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16929425	0.83[ASN][1000 genomes]
rs16929454	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16929506	0.86[EUR][1000 genomes]
rs16929512	0.86[EUR][1000 genomes]
rs16929515	0.86[EUR][1000 genomes]
rs16929516	0.86[EUR][1000 genomes]
rs16929517	0.86[EUR][1000 genomes]
rs16929568	0.86[EUR][1000 genomes]
rs16929587	0.83[EUR][1000 genomes]
rs2199837	0.80[EUR][1000 genomes]
rs34116232	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3943271	0.86[EUR][1000 genomes]
rs4737608	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4737609	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4738995	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4738996	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4739000	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4739002	0.86[EUR][1000 genomes]
rs4739003	0.81[EUR][1000 genomes]
rs4739004	0.86[EUR][1000 genomes]
rs4739008	0.86[EUR][1000 genomes]
rs56074674	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56209195	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56254488	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57259426	0.82[EUR][1000 genomes]
rs62512374	0.86[EUR][1000 genomes]
rs62512420	0.83[EUR][1000 genomes]
rs62512421	0.83[EUR][1000 genomes]
rs6996757	0.86[EUR][1000 genomes]
rs7003189	0.86[EUR][1000 genomes]
rs7005977	0.86[EUR][1000 genomes]
rs7008374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72653224	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs769042	0.83[ASN][1000 genomes]
rs7836787	0.86[EUR][1000 genomes]
rs7836794	0.84[EUR][1000 genomes]
rs931130	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63624600-63625600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:63624600-63625800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:63624600-63625800	Enhancers	Stomach Mucosa	stomach
4	chr8:63625200-63625600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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