Variant report

Variant	rs7004899
Chromosome Location	chr8:54452565-54452566
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12114990	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1551906	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1551907	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1551908	0.82[EUR][1000 genomes]
rs16922776	0.80[ASN][1000 genomes]
rs1871093	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28448344	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28498249	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6473843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6473849	0.82[EUR][1000 genomes]
rs7005854	1.00[ASN][1000 genomes]
rs7008567	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7011096	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv971308	chr8:54448965-54454234	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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