Variant report

Variant	rs7006052
Chromosome Location	chr8:10291408-10291409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MSRA-1	chr8:10291182-10295822	ENSG00000261451.1

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10108562	1.00[ASN][1000 genomes]
rs11249984	1.00[CHB][hapmap]
rs11774008	1.00[ASN][1000 genomes]
rs11777184	1.00[ASN][1000 genomes]
rs11778788	1.00[CHB][hapmap]
rs11778815	1.00[CHB][hapmap]
rs11781718	1.00[ASN][1000 genomes]
rs11783848	1.00[CHB][hapmap]
rs13269403	1.00[CHB][hapmap]
rs17151969	1.00[ASN][1000 genomes]
rs17707553	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28577240	1.00[ASN][1000 genomes]
rs34994999	1.00[ASN][1000 genomes]
rs4240644	1.00[CHB][hapmap]
rs4320513	1.00[ASN][1000 genomes]
rs4330695	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4591993	1.00[ASN][1000 genomes]
rs4602940	0.83[YRI][hapmap]
rs4840471	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841367	1.00[ASN][1000 genomes]
rs56096665	1.00[ASN][1000 genomes]
rs58842562	1.00[ASN][1000 genomes]
rs60930396	1.00[ASN][1000 genomes]
rs61743179	1.00[ASN][1000 genomes]
rs6601486	1.00[ASN][1000 genomes]
rs6981847	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6983361	1.00[CHB][hapmap]
rs7000959	0.81[YRI][hapmap]
rs73662849	1.00[ASN][1000 genomes]
rs73662851	1.00[ASN][1000 genomes]
rs73662852	1.00[ASN][1000 genomes]
rs73662853	1.00[ASN][1000 genomes]
rs73662854	1.00[ASN][1000 genomes]
rs73662855	1.00[ASN][1000 genomes]
rs73662857	1.00[ASN][1000 genomes]
rs73662858	1.00[ASN][1000 genomes]
rs7846306	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv610266	chr8:10250758-10294330	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10276000-10293600	Weak transcription	Brain Substantia Nigra	brain
2	chr8:10282600-10295200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10282800-10293800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:10283200-10291800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:10283200-10291800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:10283200-10293600	Weak transcription	Left Ventricle	heart
7	chr8:10283200-10294000	Weak transcription	Gastric	stomach
8	chr8:10283200-10295200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:10284000-10291800	Weak transcription	Right Atrium	heart
10	chr8:10285400-10293000	Weak transcription	Brain Angular Gyrus	brain
11	chr8:10285400-10293800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:10285600-10291800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:10285800-10292800	Weak transcription	Fetal Intestine Small	intestine
14	chr8:10285800-10305200	Weak transcription	Lung	lung
15	chr8:10288400-10291800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:10288400-10293800	Weak transcription	Fetal Brain Female	brain
17	chr8:10288800-10292200	Weak transcription	Spleen	Spleen
18	chr8:10289800-10293600	Weak transcription	Adipose Nuclei	Adipose
19	chr8:10290000-10294200	Strong transcription	Liver	Liver
20	chr8:10290600-10292200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:10290600-10292200	Enhancers	Fetal Brain Male	brain
22	chr8:10291000-10293000	Weak transcription	Fetal Intestine Large	intestine
23	chr8:10291200-10292400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:10291200-10292400	Strong transcription	Brain Germinal Matrix	brain
25	chr8:10291400-10301200	Weak transcription	Pancreas	Pancrea

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