Variant report

Variant	rs7008100
Chromosome Location	chr8:110477782-110477783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:110477662-110477973	K562	blood:	n/a	n/a
2	TEAD4	chr8:110477664-110477947	K562	blood:	n/a	n/a
3	CUX1	chr8:110477630-110477924	K562	blood:	n/a	n/a
4	MAFF	chr8:110477703-110477985	K562	blood:	n/a	n/a
5	CCNT2	chr8:110477620-110477848	K562	blood:	n/a	n/a
6	TEAD4	chr8:110477550-110478045	K562	blood:	n/a	n/a
7	EP300	chr8:110477701-110477941	K562	blood:	n/a	n/a
8	MAFK	chr8:110477731-110477980	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110466327..110471648-chr8:110473148..110480342,6	K562	blood:
2	chr8:110476428..110479434-chr8:110485234..110488569,3	MCF-7	breast:
3	chr8:110477232..110479716-chr8:110551976..110554277,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12541569	1.00[YRI][hapmap]
rs12543415	1.00[YRI][hapmap]
rs17450520	0.89[YRI][hapmap]
rs61741363	1.00[AMR][1000 genomes]
rs6469258	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6469259	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6469269	1.00[AMR][1000 genomes]
rs6982592	0.89[YRI][hapmap]
rs6996280	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6998812	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs7000579	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72669109	0.91[AFR][1000 genomes]
rs72669122	0.84[AFR][1000 genomes]
rs72669131	0.84[AFR][1000 genomes]
rs73309408	1.00[AMR][1000 genomes]
rs7828075	0.90[YRI][hapmap]
rs7834361	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838916	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110463200-110492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:110476800-110478000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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