Variant report

Variant	rs7009706
Chromosome Location	chr8:54507516-54507517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093917	0.95[EUR][1000 genomes]
rs12114990	0.83[EUR][1000 genomes]
rs1551906	0.85[EUR][1000 genomes]
rs1551907	0.85[EUR][1000 genomes]
rs1551908	0.85[EUR][1000 genomes]
rs1871093	0.85[EUR][1000 genomes]
rs28414831	0.91[EUR][1000 genomes]
rs28448344	0.85[EUR][1000 genomes]
rs28498249	0.85[EUR][1000 genomes]
rs28679737	0.93[EUR][1000 genomes]
rs6473849	0.85[EUR][1000 genomes]
rs6473873	0.84[EUR][1000 genomes]
rs6983490	0.95[EUR][1000 genomes]
rs6987393	0.95[EUR][1000 genomes]
rs7008567	0.85[EUR][1000 genomes]
rs7011096	0.85[EUR][1000 genomes]
rs73680192	0.95[EUR][1000 genomes]
rs73680445	0.95[EUR][1000 genomes]
rs73680446	0.95[EUR][1000 genomes]
rs73682504	0.91[EUR][1000 genomes]
rs73682506	0.91[EUR][1000 genomes]
rs73682527	0.87[EUR][1000 genomes]
rs7825111	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813750	chr8:54471135-54528984	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54503400-54510600	Weak transcription	Aorta	Aorta
2	chr8:54506800-54507600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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