Variant report

Variant	rs7012304
Chromosome Location	chr8:110168012-110168013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10087444	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10090944	0.92[ASN][1000 genomes]
rs10108349	0.83[ASN][1000 genomes]
rs11778370	0.91[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap]
rs12544197	0.88[CHD][hapmap]
rs1380096	0.82[JPT][hapmap]
rs1380097	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs1458915	0.82[JPT][hapmap]
rs1458916	0.82[JPT][hapmap]
rs1458917	0.82[JPT][hapmap]
rs1458923	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1531298	0.92[ASN][1000 genomes]
rs1548082	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1548083	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs1947629	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1993594	0.91[ASN][1000 genomes]
rs2054257	0.82[ASN][1000 genomes]
rs2125511	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2125513	0.88[ASN][1000 genomes]
rs2168964	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2926195	0.92[ASN][1000 genomes]
rs2926196	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2926197	0.92[ASN][1000 genomes]
rs2926198	0.82[JPT][hapmap]
rs2926208	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2926214	0.92[ASN][1000 genomes]
rs2926244	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2926245	0.82[JPT][hapmap]
rs2926247	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs2926259	0.87[ASN][1000 genomes]
rs2926263	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2926265	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2926269	0.90[ASN][1000 genomes]
rs2926277	0.90[ASN][1000 genomes]
rs2980565	0.82[JPT][hapmap]
rs2980589	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2980591	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2980602	0.91[ASN][1000 genomes]
rs2980603	0.82[JPT][hapmap]
rs2980606	0.91[ASN][1000 genomes]
rs2980611	0.90[ASN][1000 genomes]
rs2980618	0.82[CHD][hapmap]
rs2980619	0.87[ASW][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2980620	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2980621	0.90[ASN][1000 genomes]
rs2980623	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2980624	0.82[JPT][hapmap]
rs2980627	0.87[ASN][1000 genomes]
rs2980628	0.87[ASN][1000 genomes]
rs2980630	0.87[ASN][1000 genomes]
rs2980632	0.87[ASN][1000 genomes]
rs2980636	0.84[ASN][1000 genomes]
rs2980637	0.86[ASN][1000 genomes]
rs3134105	0.91[YRI][hapmap]
rs4129682	0.91[CHD][hapmap];0.86[GIH][hapmap]
rs4236802	0.84[YRI][hapmap]
rs4301422	0.83[JPT][hapmap]
rs4342559	0.83[JPT][hapmap]
rs4734194	0.92[ASN][1000 genomes]
rs4734195	0.92[ASN][1000 genomes]
rs4734206	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4735092	0.91[YRI][hapmap]
rs4735093	0.91[CHD][hapmap];0.86[GIH][hapmap];0.84[YRI][hapmap]
rs4735094	0.83[JPT][hapmap]
rs4735117	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4735119	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56247307	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6469235	0.92[ASN][1000 genomes]
rs6469241	0.93[ASN][1000 genomes]
rs6469248	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6469249	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6996836	0.90[ASN][1000 genomes]
rs7003376	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7003806	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7009169	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720574	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs7819201	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7839867	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7012304	PKHD1L1	cis	lymphoblastoid	seeQTL
rs7012304	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL
rs7012304	ENY2	cis	cerebellum	SCAN
rs7012304	NUDCD1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110167800-110168200	Enhancers	Duodenum Smooth Muscle	Duodenum

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