Variant report

Variant	rs7013094
Chromosome Location	chr8:10292729-10292730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MSRA-1	chr8:10291182-10295822	ENSG00000261451.1

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10089552	0.94[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10096610	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10096972	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10283145	0.82[JPT][hapmap]
rs11774221	0.82[JPT][hapmap]
rs11777976	1.00[JPT][hapmap]
rs11783478	1.00[CHB][hapmap]
rs11990519	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11991832	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252982	1.00[JPT][hapmap]
rs13254263	1.00[JPT][hapmap]
rs13267180	1.00[CHB][hapmap]
rs17151843	0.82[JPT][hapmap]
rs17184083	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17709397	0.82[JPT][hapmap]
rs17765901	0.82[JPT][hapmap]
rs17767019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17788148	0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2001364	0.82[JPT][hapmap]
rs34259385	0.94[ASN][1000 genomes]
rs3750310	1.00[JPT][hapmap]
rs3750311	1.00[JPT][hapmap]
rs4074083	1.00[JPT][hapmap]
rs4342552	1.00[JPT][hapmap]
rs4433149	0.82[JPT][hapmap]
rs4452832	0.94[ASN][1000 genomes]
rs4610752	0.82[JPT][hapmap]
rs4840482	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4841338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4841352	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55768320	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56169969	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56184206	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56359131	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56410018	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6601451	0.82[JPT][hapmap]
rs6987571	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6993610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6999865	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7004449	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005230	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005447	0.84[CEU][hapmap]
rs73203358	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73203359	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73203360	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73203362	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73203376	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7460852	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7824675	0.82[JPT][hapmap]
rs7831557	1.00[JPT][hapmap]
rs7833781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7841921	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv610266	chr8:10250758-10294330	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10276000-10293600	Weak transcription	Brain Substantia Nigra	brain
2	chr8:10282600-10295200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10282800-10293800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:10283200-10293600	Weak transcription	Left Ventricle	heart
5	chr8:10283200-10294000	Weak transcription	Gastric	stomach
6	chr8:10283200-10295200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr8:10285400-10293000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:10285400-10293800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:10285800-10292800	Weak transcription	Fetal Intestine Small	intestine
10	chr8:10285800-10305200	Weak transcription	Lung	lung
11	chr8:10288400-10293800	Weak transcription	Fetal Brain Female	brain
12	chr8:10289800-10293600	Weak transcription	Adipose Nuclei	Adipose
13	chr8:10290000-10294200	Strong transcription	Liver	Liver
14	chr8:10291000-10293000	Weak transcription	Fetal Intestine Large	intestine
15	chr8:10291400-10301200	Weak transcription	Pancreas	Pancrea
16	chr8:10291800-10294000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr8:10292200-10294400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:10292200-10321400	Weak transcription	Fetal Brain Male	brain
19	chr8:10292400-10294200	ZNF genes & repeats	Brain Germinal Matrix	brain
20	chr8:10292400-10294400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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