Variant report
| Variant | rs7013102 |
|---|---|
| Chromosome Location | chr8:50132255-50132256 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:50130806..50133714-chr8:50138525..50141483,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10108796 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10957379 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10957380 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11785478 | 0.88[EUR][1000 genomes] |
| rs11992066 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17665537 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1842401 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2170190 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4355782 | 0.84[EUR][1000 genomes] |
| rs55896231 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs55904037 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56336550 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56368009 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs58718013 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72643127 | 0.84[EUR][1000 genomes] |
| rs72643128 | 0.84[EUR][1000 genomes] |
| rs72643129 | 0.84[EUR][1000 genomes] |
| rs72643150 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72643182 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72643185 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72643186 | 0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72643199 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72644404 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72644405 | 0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72644431 | 0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72644448 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7830889 | 0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025068 | chr8:49953397-50370208 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034908 | chr8:50023423-50416049 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv539601 | chr8:50023423-50416049 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1024410 | chr8:50037085-50511501 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv428517 | chr8:50094920-50232993 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv890855 | chr8:50109365-50252962 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50131800-50132400 | Enhancers | Stomach Mucosa | stomach |
| 2 | chr8:50131800-50133800 | Enhancers | K562 | blood |
