Variant report

Variant	rs7013277
Chromosome Location	chr8:10824384-10824385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10087923	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10088408	0.86[ASN][1000 genomes]
rs10096381	1.00[CHB][hapmap]
rs10111950	0.81[ASN][1000 genomes]
rs11250098	0.88[ASN][1000 genomes]
rs11250099	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs28494533	0.82[EUR][1000 genomes]
rs34031674	0.82[EUR][1000 genomes]
rs34959618	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35027032	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3885690	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs4314618	0.81[ASN][1000 genomes]
rs4841465	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs61581529	0.81[ASN][1000 genomes]
rs6601541	0.84[CEU][hapmap];0.87[GIH][hapmap];0.81[EUR][1000 genomes]
rs6601542	0.84[CEU][hapmap];0.87[GIH][hapmap]
rs6983869	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7001456	0.82[CHB][hapmap]
rs7821914	0.85[CEU][hapmap];0.88[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7013277	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs7013277	FLJ10661	cis	parietal	SCAN
rs7013277	MFHAS1	cis	cerebellum	SCAN
rs7013277	PRSS55	cis	cerebellum	SCAN
rs7013277	AF131215.9	cis	Skin Sun Exposed Lower leg	GTEx
rs7013277	FLJ10661	cis	cerebellum	SCAN
rs7013277	TDH	cis	cerebellum	SCAN
rs7013277	DEFB134	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10823200-10824400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:10823600-10824600	Weak transcription	Brain Anterior Caudate	brain
3	chr8:10823800-10824800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:10824000-10825000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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