Variant report

Variant	rs7019238
Chromosome Location	chr9:71066165-71066166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1041290	0.89[ASN][1000 genomes]
rs10511958	0.80[ASW][hapmap];0.95[GIH][hapmap];0.80[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs10780955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10780960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[ASN][1000 genomes]
rs10780967	0.95[GIH][hapmap]
rs10781002	0.86[GIH][hapmap]
rs10868817	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10868826	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10868851	0.95[GIH][hapmap]
rs10868852	0.95[GIH][hapmap]
rs10868877	0.95[GIH][hapmap]
rs10868922	0.88[CHB][hapmap]
rs11142391	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11142449	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11142461	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11142499	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11142500	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11142541	0.85[ASN][1000 genomes]
rs11142616	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12238439	0.88[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12353500	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13439981	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.81[ASN][1000 genomes]
rs1353009	0.95[GIH][hapmap];0.90[TSI][hapmap]
rs1353010	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs265083	0.86[GIH][hapmap]
rs265087	0.81[GIH][hapmap]
rs4744594	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs4745041	0.95[GIH][hapmap];0.90[TSI][hapmap]
rs59478866	0.96[ASN][1000 genomes]
rs6560144	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs7021955	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7031619	0.80[AFR][1000 genomes]
rs72714318	0.91[ASN][1000 genomes]
rs7855134	0.80[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7860270	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7875408	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
3	chr9:71058200-71068000	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:71062200-71069400	Weak transcription	NHLF	lung
5	chr9:71062200-71075800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:71062400-71066600	Weak transcription	Aorta	Aorta
7	chr9:71062400-71066600	Enhancers	Colon Smooth Muscle	Colon
8	chr9:71062400-71072200	Weak transcription	Fetal Heart	heart
9	chr9:71063200-71070800	Weak transcription	Fetal Lung	lung
10	chr9:71063800-71066600	Weak transcription	Right Atrium	heart
11	chr9:71064600-71066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:71065000-71066600	Weak transcription	Left Ventricle	heart
13	chr9:71065000-71067000	Weak transcription	Fetal Stomach	stomach
14	chr9:71065000-71069800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:71065800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:71066000-71066200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:71066000-71066400	Genic enhancers	Stomach Smooth Muscle	stomach

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