Variant report

Variant	rs7019336
Chromosome Location	chr9:72734856-72734857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72733654..72736603-chr9:72737665..72741649,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12555048	0.86[CHB][hapmap]
rs17052411	0.88[CHB][hapmap]
rs17088691	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927131	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1927149	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2975863	0.93[ASN][1000 genomes]
rs2997674	0.90[ASN][1000 genomes]
rs2997675	0.89[ASN][1000 genomes]
rs2997680	0.97[ASN][1000 genomes]
rs2997685	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3015188	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949052	chr9:72698039-72741247	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72714800-72742400	Weak transcription	Aorta	Aorta
2	chr9:72722000-72758400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:72724400-72742600	Weak transcription	Right Ventricle	heart
4	chr9:72725200-72735800	Weak transcription	Fetal Brain Male	brain
5	chr9:72725600-72735400	Weak transcription	Right Atrium	heart
6	chr9:72725600-72740400	Weak transcription	Fetal Lung	lung
7	chr9:72725600-72745200	Weak transcription	Lung	lung
8	chr9:72725800-72742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:72725800-72764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:72726000-72735800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:72726200-72741000	Weak transcription	Fetal Stomach	stomach
12	chr9:72726200-72749200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:72726800-72785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:72727000-72740400	Weak transcription	Esophagus	oesophagus
15	chr9:72727000-72776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:72727200-72735600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:72727200-72737800	Weak transcription	Pancreas	Pancrea
18	chr9:72727200-72746600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:72728200-72752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr9:72728200-72758400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:72728400-72735000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:72728400-72735200	Strong transcription	Colon Smooth Muscle	Colon
23	chr9:72728400-72735200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:72728600-72740400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:72728600-72746800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:72728800-72735400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr9:72728800-72735800	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:72729200-72744800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:72730600-72737400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr9:72730800-72737400	Enhancers	NHEK	skin
31	chr9:72730800-72738000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:72731200-72735800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:72731200-72735800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:72731200-72768400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:72731600-72735800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:72731600-72736400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:72732400-72737600	Enhancers	HMEC	breast
38	chr9:72732600-72736000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:72732600-72737400	Enhancers	NH-A	brain
40	chr9:72732600-72737600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:72732800-72737200	Genic enhancers	HSMMtube	muscle
42	chr9:72732800-72737400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:72732800-72737600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:72733200-72735000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:72733200-72741000	Weak transcription	Left Ventricle	heart
46	chr9:72733200-72745000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr9:72733600-72735800	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:72733600-72736400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr9:72733800-72748400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr9:72734000-72737400	Enhancers	NHLF	lung

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