Variant report

Variant	rs7019851
Chromosome Location	chr9:15769551-15769552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 233 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs1009468	1.00[CHB][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs10118359	0.80[EUR][1000 genomes]
rs10119975	0.82[EUR][1000 genomes]
rs10121591	0.81[EUR][1000 genomes]
rs10122339	0.81[EUR][1000 genomes]
rs10283865	0.89[CHB][hapmap]
rs10481557	0.83[MEX][hapmap]
rs10733295	0.89[CEU][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs10756674	0.81[TSI][hapmap]
rs10756677	0.88[CHB][hapmap];0.87[MEX][hapmap]
rs10756686	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs10756687	0.84[CHB][hapmap];0.87[MEX][hapmap]
rs10756688	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs10756689	0.89[CHB][hapmap]
rs10756690	0.84[CHB][hapmap]
rs10756691	0.82[EUR][1000 genomes]
rs10756697	0.83[MEX][hapmap]
rs10756704	0.85[CEU][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10810402	0.81[TSI][hapmap]
rs10810408	0.82[MEX][hapmap]
rs10810416	0.89[CEU][hapmap]
rs10810419	0.89[CEU][hapmap]
rs10810424	0.80[EUR][1000 genomes]
rs10810426	0.89[CEU][hapmap]
rs10810427	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs10810428	0.84[CHB][hapmap];0.83[TSI][hapmap]
rs10810429	0.89[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810430	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810438	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810439	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10810440	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10810442	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810446	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10962098	0.89[CHB][hapmap]
rs10962099	0.89[CHB][hapmap]
rs10962121	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962123	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962125	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10962126	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962146	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10962147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962149	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10962151	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10962152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962153	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10962156	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10962157	0.85[CEU][hapmap]
rs10962158	0.85[CEU][hapmap]
rs10962170	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs10962171	0.82[EUR][1000 genomes]
rs11515218	0.87[EUR][1000 genomes]
rs11521158	0.87[EUR][1000 genomes]
rs1169478	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs1169479	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs1169480	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11793900	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12004358	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12340969	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs12341679	0.82[ASW][hapmap];0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12349323	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12352779	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12377371	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12378499	1.00[CEU][hapmap]
rs1328288	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs13283620	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13287834	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13295778	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13296276	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13296360	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1341734	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341735	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341737	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs1341738	0.81[EUR][1000 genomes]
rs1355171	0.89[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]
rs1355173	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1359953	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1396706	0.89[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1396707	0.87[MEX][hapmap];0.83[TSI][hapmap]
rs1396708	0.83[MEX][hapmap]
rs1509310	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1533040	0.84[CHB][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap]
rs1539171	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1539172	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539173	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1572978	1.00[CHB][hapmap]
rs169342	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs183928	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs1891211	0.89[CHB][hapmap]
rs1891212	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs192466	0.85[CEU][hapmap]
rs1970497	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1984246	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs2055772	0.82[MEX][hapmap]
rs2066292	0.94[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap]
rs2096121	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105317	0.85[CEU][hapmap]
rs2149231	1.00[CHB][hapmap]
rs2153725	1.00[CHB][hapmap]
rs2153726	1.00[CHB][hapmap]
rs2153727	1.00[CHB][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs2175080	0.85[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2175082	0.83[CHB][hapmap];0.87[MEX][hapmap]
rs2185663	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2185665	1.00[CHB][hapmap]
rs2382540	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2382553	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs276435	0.88[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs276436	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs276448	0.89[CEU][hapmap]
rs276449	0.89[CEU][hapmap]
rs276453	0.89[CEU][hapmap]
rs276454	0.81[CEU][hapmap]
rs276455	0.89[CEU][hapmap]
rs2794634	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2794636	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs28410434	0.83[EUR][1000 genomes]
rs2891007	1.00[CHB][hapmap]
rs2987069	1.00[CHB][hapmap]
rs2987070	1.00[CHB][hapmap]
rs2987071	1.00[CHB][hapmap]
rs2987072	1.00[CHB][hapmap]
rs3008686	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs3119699	0.85[CEU][hapmap]
rs34700988	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35057009	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36013000	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36086644	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4146290	0.85[CEU][hapmap]
rs4146291	0.85[CEU][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs432452	0.89[CEU][hapmap]
rs433849	0.84[CEU][hapmap]
rs442549	0.89[CEU][hapmap]
rs451878	0.89[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];0.95[TSI][hapmap]
rs4740615	0.87[MEX][hapmap];0.80[TSI][hapmap]
rs4740619	0.82[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap]
rs4740624	0.82[MEX][hapmap];0.81[TSI][hapmap]
rs4741519	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs4741528	0.89[CHB][hapmap];0.81[CHD][hapmap]
rs4741534	0.82[CHB][hapmap];0.83[TSI][hapmap]
rs56401042	0.83[EUR][1000 genomes]
rs58517712	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62571268	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62573118	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474931	0.84[CHB][hapmap]
rs6474944	0.82[CHB][hapmap];0.81[TSI][hapmap]
rs6474945	0.82[CHB][hapmap]
rs6474946	0.80[EUR][1000 genomes]
rs6474951	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474952	0.85[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474954	0.82[CHB][hapmap];0.83[TSI][hapmap]
rs6474962	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6474963	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6474964	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474965	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474966	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6474967	0.85[CEU][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6474974	0.85[CEU][hapmap];0.83[MEX][hapmap]
rs7018872	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7019143	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019205	1.00[CHB][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs7019323	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023275	0.89[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs7024640	0.83[TSI][hapmap]
rs7025420	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7025669	0.89[CHB][hapmap]
rs7027202	0.89[CHB][hapmap]
rs7028999	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7032457	1.00[CHB][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs7032634	1.00[CHB][hapmap]
rs7032755	0.83[JPT][hapmap];0.82[MEX][hapmap]
rs7034484	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs7034781	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7035863	0.89[CEU][hapmap]
rs7036285	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7036674	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7036775	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7037662	0.83[EUR][1000 genomes]
rs7037908	0.83[EUR][1000 genomes]
rs7043770	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7045018	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7047045	1.00[CHB][hapmap]
rs7467156	0.92[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs7467207	0.88[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7470881	0.81[EUR][1000 genomes]
rs770191	1.00[CHB][hapmap]
rs770211	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs770213	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs770215	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs770524	0.85[CEU][hapmap]
rs7846970	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7847144	0.82[MEX][hapmap];0.83[TSI][hapmap]
rs7853744	0.81[ASW][hapmap];1.00[CHB][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap]
rs7857495	0.81[EUR][1000 genomes]
rs7857601	0.80[EUR][1000 genomes]
rs7860024	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7860528	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7860755	0.85[CEU][hapmap]
rs7860869	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7860992	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7861802	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7863088	0.83[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap]
rs7866641	1.00[CHB][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs7869624	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7871232	0.81[EUR][1000 genomes]
rs7872912	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7873776	0.85[CEU][hapmap]
rs7874533	0.83[TSI][hapmap]
rs9298738	1.00[CHB][hapmap]
rs9298739	1.00[CHB][hapmap]
rs9298740	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9298741	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9406536	0.82[EUR][1000 genomes]
rs9406537	1.00[CHB][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs9406542	1.00[CHB][hapmap]
rs9407648	1.00[CHB][hapmap]
rs9407649	1.00[CHB][hapmap]
rs9407650	1.00[CHB][hapmap]
rs9407651	1.00[CHB][hapmap]
rs9407652	1.00[CHB][hapmap]
rs9407654	1.00[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs9407657	1.00[CHB][hapmap]
rs9407661	1.00[CHB][hapmap]
rs9407662	1.00[CHB][hapmap]
rs954663	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs954664	0.82[EUR][1000 genomes]
rs955369	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7019851	C9orf93	cis	brain	seeQTL
rs7019851	C9orf93	cis	cerebellum	SCAN
rs7019851	C9orf93	cis	parietal	SCAN
rs7019851	INPP4B	trans	brain	seeQTL
rs7019851	ADAMTSL1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
2	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15763600-15774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:15766000-15770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:15769400-15769800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links