Variant report

Variant	rs7019865
Chromosome Location	chr9:706479-706480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:706133-707210	MCF10A-Er-Src	breast:	n/a	chr9:706703-706722 chr9:706708-706717 chr9:706706-706719
2	MXI1	chr9:706227-707544	IMR90	lung:	n/a	chr9:707239-707248
3	MAX	chr9:706049-707519	HepG2	liver:	n/a	chr9:707239-707249 chr9:706703-706722 chr9:707240-707250 chr9:706708-706717 chr9:707240-707249 chr9:707239-707250 chr9:707240-707249 chr9:707240-707249 chr9:707235-707254 chr9:707265-707274 chr9:707241-707250 chr9:706706-706719
4	MYBL2	chr9:705959-707175	HepG2	liver:	n/a	n/a
5	POLR2A	chr9:706475-707442	HUVEC	blood vessel:	n/a	n/a
6	NFIC	chr9:706017-706544	HepG2	liver:	n/a	n/a
7	MYC	chr9:706294-707543	NB4	blood:	n/a	chr9:707239-707249 chr9:706703-706722 chr9:707240-707250 chr9:706708-706717 chr9:707240-707249 chr9:707239-707250 chr9:707240-707249 chr9:707240-707249 chr9:707235-707254 chr9:707265-707274 chr9:707241-707250 chr9:706706-706719
8	MBD4	chr9:706056-706559	HepG2	liver:	n/a	n/a
9	HNF4G	chr9:706154-706517	HepG2	liver:	n/a	chr9:706277-706290 chr9:706275-706290 chr9:706278-706291 chr9:706277-706292 chr9:706277-706292 chr9:706275-706293 chr9:706279-706291 chr9:706277-706291 chr9:706278-706290 chr9:706278-706290 chr9:706277-706292 chr9:706277-706292 chr9:706278-706290 chr9:706277-706290 chr9:706277-706291 chr9:706277-706292 chr9:706278-706286 chr9:706277-706290
10	EP300	chr9:706265-707346	HepG2	liver:	n/a	n/a
11	POLR2A	chr9:705860-709863	HepG2	liver:	n/a	n/a
12	HEY1	chr9:705990-709648	HepG2	liver:	n/a	chr9:706708-706717
13	MXI1	chr9:706131-707470	HepG2	liver:	n/a	chr9:707239-707248
14	TEAD4	chr9:705911-707276	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:706114-707566	HepG2	liver:	n/a	n/a
16	MAX	chr9:706295-707525	NB4	blood:	n/a	chr9:707239-707249 chr9:706703-706722 chr9:707240-707250 chr9:706708-706717 chr9:707240-707249 chr9:707239-707250 chr9:707240-707249 chr9:707240-707249 chr9:707235-707254 chr9:707265-707274 chr9:707241-707250 chr9:706706-706719
17	POLR2A	chr9:706107-707471	HepG2	liver:	n/a	n/a
18	TBP	chr9:706120-707236	HepG2	liver:	n/a	n/a
19	HNF4A	chr9:706065-706497	HepG2	liver:	n/a	chr9:706276-706291 chr9:706277-706290 chr9:706278-706291 chr9:706277-706292 chr9:706277-706292 chr9:706275-706293 chr9:706279-706291 chr9:706277-706291 chr9:706278-706290 chr9:706278-706290 chr9:706277-706292 chr9:706277-706292 chr9:706278-706290 chr9:706277-706290 chr9:706277-706291 chr9:706277-706292 chr9:706278-706286 chr9:706277-706290

Variant related genes	Relation type
KANK1	TF binding region

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10119922	0.87[ASN][1000 genomes]
rs11999500	0.87[ASN][1000 genomes]
rs1475203	1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs16922643	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs17432514	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs56369070	0.87[ASN][1000 genomes]
rs56694848	0.87[ASN][1000 genomes]
rs57814193	0.87[ASN][1000 genomes]
rs62531215	0.87[ASN][1000 genomes]
rs62531217	0.87[ASN][1000 genomes]
rs62531220	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855995	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9407298	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:88 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
17	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv530918	chr9:381430-839211	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
19	esv2752307	chr9:382810-733212	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	esv2829905	chr9:395025-712156	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv1021206	chr9:399146-911325	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
22	nsv1029985	chr9:459016-813600	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
23	nsv539895	chr9:459016-813600	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
24	nsv916532	chr9:459131-862833	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
25	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
26	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
27	nsv1026988	chr9:495809-827580	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
28	nsv539898	chr9:495809-827580	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
29	nsv1017472	chr9:518235-742803	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
30	nsv1023357	chr9:518235-775704	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
31	esv2758175	chr9:524413-853033	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
32	esv2759655	chr9:524413-853033	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
33	nsv427836	chr9:524413-853033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
34	nsv1033964	chr9:525037-816742	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
35	nsv1019676	chr9:525752-804603	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
36	nsv1021488	chr9:525752-813181	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
37	nsv1031342	chr9:525752-814210	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
38	nsv1018759	chr9:525752-816742	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
39	nsv613019	chr9:526772-811618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
40	nsv1016312	chr9:532699-813600	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
41	nsv539901	chr9:532699-813600	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
42	nsv1025677	chr9:534089-814330	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
43	nsv539902	chr9:534089-814330	Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
44	nsv891987	chr9:535866-716570	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
45	nsv1033322	chr9:546674-755830	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
46	nsv1032909	chr9:546674-860810	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
47	nsv531562	chr9:556625-789845	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
48	esv2757300	chr9:564836-738434	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
49	nsv469655	chr9:571838-722561	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
50	nsv482662	chr9:571838-722561	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:670800-706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:691200-706600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:695000-706800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:695200-706800	Weak transcription	Spleen	Spleen
5	chr9:696000-706600	Weak transcription	Lung	lung
6	chr9:696800-706600	Weak transcription	Fetal Thymus	thymus
7	chr9:697000-706600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:698200-706600	Weak transcription	Gastric	stomach
9	chr9:698400-706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:698400-706600	Weak transcription	Right Ventricle	heart
11	chr9:698400-706800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:699200-706600	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:699400-706600	Weak transcription	Left Ventricle	heart
14	chr9:700000-706600	Weak transcription	Fetal Stomach	stomach
15	chr9:704000-706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:704600-706600	Weak transcription	Psoas Muscle	Psoas
17	chr9:705600-706800	Flanking Active TSS	HepG2	liver
18	chr9:705800-706600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:705800-706600	Enhancers	Brain Substantia Nigra	brain
20	chr9:705800-706600	Weak transcription	Esophagus	oesophagus
21	chr9:706000-706600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:706000-706600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:706000-706600	Weak transcription	Placenta	Placenta
24	chr9:706000-706600	Weak transcription	Pancreas	Pancrea
25	chr9:706000-706600	Enhancers	HSMMtube	muscle
26	chr9:706000-706800	Flanking Active TSS	A549	lung
27	chr9:706000-707200	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr9:706000-707400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:706200-706600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:706200-706600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:706200-706600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr9:706200-706600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr9:706200-706600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr9:706200-706600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
35	chr9:706200-706600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:706200-706600	Enhancers	Primary B cells from peripheral blood	blood
37	chr9:706200-706600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr9:706200-706600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr9:706200-706600	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr9:706200-706600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:706200-706600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:706200-706600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:706200-706600	Enhancers	Brain Angular Gyrus	brain
44	chr9:706200-706600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr9:706200-706600	Enhancers	Placenta Amnion	Placenta Amnion
46	chr9:706200-706600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr9:706200-706600	Enhancers	Stomach Mucosa	stomach
48	chr9:706200-706600	Enhancers	Hela-S3	cervix
49	chr9:706200-706600	Flanking Active TSS	HMEC	breast
50	chr9:706200-706800	Flanking Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links