Variant report

Variant	rs7021166
Chromosome Location	chr9:73173781-73173782
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17055312	0.81[AFR][1000 genomes]
rs2001378	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2001379	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58649393	0.81[AFR][1000 genomes]
rs60810117	1.00[AMR][1000 genomes]
rs7034786	1.00[AMR][1000 genomes]
rs73453879	1.00[AMR][1000 genomes]
rs73649176	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73165800-73176200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:73165800-73176200	Weak transcription	Small Intestine	intestine
4	chr9:73169800-73175600	Weak transcription	Fetal Lung	lung
5	chr9:73170000-73189000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:73170200-73176600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:73170200-73178400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:73170200-73181200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:73170400-73177800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:73170600-73179200	Weak transcription	Brain Substantia Nigra	brain
11	chr9:73170800-73188400	Weak transcription	Right Atrium	heart
12	chr9:73171000-73176200	Weak transcription	Adipose Nuclei	Adipose
13	chr9:73172000-73173800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr9:73172400-73178200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:73173200-73173800	Flanking Active TSS	GM12878-XiMat	blood
16	chr9:73173400-73176600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:73173400-73177800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:73173600-73177800	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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