Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10780955	1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10780960	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10780963	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs10780967	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs10868817	1.00[JPT][hapmap]
rs10868852	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs10868877	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs10868922	0.88[YRI][hapmap]
rs11142391	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11142449	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11142461	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11142499	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11142500	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11142541	0.95[ASN][1000 genomes]
rs11142549	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs11142616	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12238439	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13439981	0.85[CHB][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1353010	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28510448	0.83[AFR][1000 genomes]
rs35011246	0.89[AFR][1000 genomes]
rs59478866	0.85[ASN][1000 genomes]
rs7019238	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7026163	0.87[AFR][1000 genomes]
rs72714318	0.80[ASN][1000 genomes]
rs7855134	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7875408	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:71077600-71098800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
7	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
8	chr9:71081000-71098800	Weak transcription	Fetal Kidney	kidney
9	chr9:71082200-71088200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:71082200-71088400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:71083200-71091600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:71085800-71091400	Weak transcription	Fetal Lung	lung
13	chr9:71086200-71087600	Enhancers	Colon Smooth Muscle	Colon
14	chr9:71086200-71092000	Weak transcription	Right Atrium	heart
15	chr9:71086400-71088000	Weak transcription	Fetal Heart	heart
16	chr9:71087000-71087600	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:71087000-71087600	Genic enhancers	Stomach Smooth Muscle	stomach
18	chr9:71087400-71090800	Weak transcription	Left Ventricle	heart
19	chr9:71087400-71091400	Weak transcription	Fetal Stomach	stomach
20	chr9:71087400-71092000	Weak transcription	Aorta	Aorta
21	chr9:71087400-71107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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