Variant report

Variant	rs7024144
Chromosome Location	chr9:1232509-1232510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10738265	0.95[ASN][1000 genomes]
rs10756346	0.98[ASN][1000 genomes]
rs10756359	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10809735	0.98[ASN][1000 genomes]
rs1933032	1.00[ASN][1000 genomes]
rs1933044	0.95[ASN][1000 genomes]
rs2889036	1.00[ASN][1000 genomes]
rs4740517	0.95[ASN][1000 genomes]
rs4741202	0.95[ASN][1000 genomes]
rs7018922	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7029496	0.98[ASN][1000 genomes]
rs7874807	0.91[ASN][1000 genomes]
rs9298671	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817248	chr9:706283-1457665	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1016222	chr9:999390-1284180	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1016321	chr9:1034594-1592366	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539908	chr9:1034594-1592366	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv948914	chr9:1050981-1311310	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2758176	chr9:1055347-1529128	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2759656	chr9:1055347-1529128	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv2752273	chr9:1062218-1824888	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1026043	chr9:1079462-1732502	Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv539909	chr9:1079462-1732502	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv892018	chr9:1124136-1235993	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2757301	chr9:1183321-1413700	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv34351	chr9:1184213-1413700	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv2756319	chr9:1185520-1293110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv892020	chr9:1189365-1265994	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv818672	chr9:1200036-1404430	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv1031506	chr9:1216007-1472056	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1020093	chr9:1229704-1245284	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv613050	chr9:1230619-1311310	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1022624	chr9:1231372-1311310	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:1231400-1232800	Enhancers	Psoas Muscle	Psoas
2	chr9:1231600-1233600	Enhancers	HepG2	liver
3	chr9:1231800-1232600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:1231800-1232800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:1231800-1232800	Enhancers	Fetal Intestine Large	intestine
6	chr9:1232000-1232600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:1232000-1232600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:1232000-1232600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:1232000-1232600	Enhancers	Fetal Intestine Small	intestine
10	chr9:1232000-1232600	Enhancers	Pancreas	Pancrea
11	chr9:1232000-1232800	Enhancers	Fetal Stomach	stomach
12	chr9:1232200-1232600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:1232200-1232600	Flanking Active TSS	Liver	Liver
14	chr9:1232200-1232600	Enhancers	Esophagus	oesophagus
15	chr9:1232200-1232600	Flanking Active TSS	Fetal Lung	lung
16	chr9:1232200-1232600	Enhancers	Ovary	ovary
17	chr9:1232200-1232600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr9:1232200-1232600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr9:1232200-1232600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:1232200-1232600	Enhancers	Stomach Mucosa	stomach
21	chr9:1232200-1232600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr9:1232200-1232600	Flanking Active TSS	HSMM	muscle
23	chr9:1232200-1232600	Flanking Active TSS	HSMMtube	muscle
24	chr9:1232200-1232600	Flanking Active TSS	NHLF	lung
25	chr9:1232200-1232800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:1232200-1232800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr9:1232200-1232800	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr9:1232200-1232800	Enhancers	Fetal Muscle Leg	muscle
29	chr9:1232200-1232800	Flanking Active TSS	NHEK	skin
30	chr9:1232400-1232600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:1232400-1232600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:1232400-1232600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:1232400-1232600	Active TSS	Adipose Nuclei	Adipose
34	chr9:1232400-1232600	Flanking Active TSS	NHDF-Ad	bronchial
35	chr9:1232400-1232600	Flanking Active TSS	Osteobl	bone
36	chr9:1232400-1232800	Active TSS	Aorta	Aorta
37	chr9:1232400-1232800	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr9:1232400-1232800	Active TSS	Rectal Smooth Muscle	rectum
39	chr9:1232400-1232800	Active TSS	A549	lung

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