Variant report

Variant	rs7025750
Chromosome Location	chr9:16408042-16408043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10511620	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs10511621	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs12005952	0.82[CHD][hapmap]
rs16934614	0.81[JPT][hapmap]
rs16934619	0.81[JPT][hapmap]
rs16934621	1.00[CEU][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934644	1.00[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs16934647	1.00[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs16934660	1.00[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs16934675	1.00[CEU][hapmap]
rs16934679	1.00[CEU][hapmap]
rs16934681	0.82[CEU][hapmap]
rs1927622	1.00[CEU][hapmap]
rs1927623	0.82[CEU][hapmap]
rs1927624	0.81[EUR][1000 genomes]
rs1927625	1.00[CEU][hapmap]
rs2296862	1.00[CEU][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296863	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296864	1.00[CEU][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3739715	1.00[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs3814110	1.00[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs41313973	0.85[EUR][1000 genomes]
rs41313975	0.85[EUR][1000 genomes]
rs57010092	0.83[EUR][1000 genomes]
rs57310704	0.83[EUR][1000 genomes]
rs57937957	0.83[EUR][1000 genomes]
rs58105894	0.83[EUR][1000 genomes]
rs59049761	0.83[EUR][1000 genomes]
rs60573475	0.83[EUR][1000 genomes]
rs61393085	0.83[EUR][1000 genomes]
rs7021534	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7041544	0.81[EUR][1000 genomes]
rs7851973	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs7867445	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs7871743	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400000-16411000	Weak transcription	NHLF	lung
2	chr9:16400600-16410200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:16401000-16408800	Weak transcription	A549	lung
5	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
6	chr9:16406400-16408400	Enhancers	Fetal Lung	lung
7	chr9:16407000-16412800	Weak transcription	Ovary	ovary
8	chr9:16407200-16410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:16407200-16417000	Weak transcription	HSMM	muscle
11	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney

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