Variant report

Variant	rs7029177
Chromosome Location	chr9:71036007-71036008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10735596	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10868795	0.96[ASN][1000 genomes]
rs10868796	0.91[ASN][1000 genomes]
rs10868803	0.95[ASN][1000 genomes]
rs10868804	0.95[ASN][1000 genomes]
rs11142199	0.99[ASN][1000 genomes]
rs11142305	0.92[ASN][1000 genomes]
rs11142334	0.92[ASN][1000 genomes]
rs11142335	0.92[ASN][1000 genomes]
rs1492822	0.90[ASN][1000 genomes]
rs1492823	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1492824	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1887889	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1976232	0.92[ASN][1000 genomes]
rs2026033	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2026034	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7020465	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7025140	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71027600-71041800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:71033000-71041800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:71033600-71038600	Weak transcription	Aorta	Aorta
5	chr9:71033800-71040200	Weak transcription	Fetal Lung	lung
6	chr9:71033800-71041600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:71033800-71041600	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:71033800-71041800	Weak transcription	Psoas Muscle	Psoas
9	chr9:71035200-71038800	Weak transcription	Right Ventricle	heart
10	chr9:71035200-71040000	Weak transcription	Fetal Stomach	stomach
11	chr9:71035200-71040000	Weak transcription	Right Atrium	heart
12	chr9:71035200-71041600	Weak transcription	Left Ventricle	heart
13	chr9:71035400-71038600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:71035400-71041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:71035800-71036400	Enhancers	Fetal Heart	heart
16	chr9:71035800-71038400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:71035800-71042000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:71036000-71036200	Enhancers	Lung	lung
19	chr9:71036000-71038400	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links