Variant report

Variant	rs7031694
Chromosome Location	chr9:72223176-72223177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10123008	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10746682	0.82[CEU][hapmap];0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs10780527	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10780528	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10780539	0.82[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.96[ASN][1000 genomes]
rs10867825	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10867828	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10867830	0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11139338	0.86[ASW][hapmap];0.86[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs11139361	0.86[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs11139511	0.82[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs1330334	0.91[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs1330336	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1411440	0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556211	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1854702	0.82[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs1854703	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1967880	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1970017	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2026150	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2161056	0.91[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs2309515	0.87[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4744913	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4744917	0.82[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs4744919	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6559643	0.93[ASW][hapmap];0.82[CEU][hapmap];0.85[JPT][hapmap]
rs7030393	0.86[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7853783	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7871895	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs986352	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987653	0.81[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7031694	GDA	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
2	chr9:72219600-72226000	Weak transcription	Liver	Liver
3	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
4	chr9:72221200-72237200	Weak transcription	Ovary	ovary

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