Variant report

Variant	rs7032090
Chromosome Location	chr9:17777004-17777005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13301348	0.84[YRI][hapmap]
rs2182082	1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2209426	0.89[ASW][hapmap];0.92[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2209427	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2209429	0.89[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2224953	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2274216	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2383046	0.88[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs2383047	0.88[LWK][hapmap];0.84[YRI][hapmap]
rs2891112	0.84[AFR][1000 genomes]
rs3736897	0.80[CHB][hapmap];0.88[ASN][1000 genomes]
rs4141716	0.81[CEU][hapmap];0.84[AFR][1000 genomes]
rs4961595	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6475171	0.90[EUR][1000 genomes]
rs6475172	0.92[CEU][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs7020594	0.91[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs7032215	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs7851224	0.86[EUR][1000 genomes]
rs7858932	0.84[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7868359	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9406698	0.87[EUR][1000 genomes]
rs9407845	0.88[EUR][1000 genomes]
rs9407846	0.92[CEU][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7032090	SLC24A2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17764600-17782800	Weak transcription	Gastric	stomach
2	chr9:17776800-17786200	Weak transcription	Fetal Brain Male	brain

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