Variant report

Variant	rs7032367
Chromosome Location	chr9:17800293-17800294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1049430	0.83[AMR][1000 genomes]
rs10756912	0.81[AMR][1000 genomes]
rs10810852	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810853	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10810854	0.89[AMR][1000 genomes]
rs10963281	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4284124	0.80[AMR][1000 genomes]
rs4302936	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4373621	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4510955	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4523358	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4599896	0.80[AMR][1000 genomes]
rs4961449	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6475174	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7025077	0.81[AMR][1000 genomes]
rs7028412	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7041618	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17787000-17800400	Weak transcription	Fetal Brain Female	brain
2	chr9:17788600-17805400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:17796000-17812000	Weak transcription	Aorta	Aorta
4	chr9:17799000-17800600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:17799400-17800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:17799400-17800600	Enhancers	Fetal Heart	heart
7	chr9:17799800-17801000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:17800000-17802000	Enhancers	Fetal Brain Male	brain
9	chr9:17800200-17800600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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