Variant report

Variant	rs7036431
Chromosome Location	chr9:17769007-17769008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10122834	0.95[EUR][1000 genomes]
rs10738488	0.96[EUR][1000 genomes]
rs10738489	0.95[EUR][1000 genomes]
rs10810847	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810851	0.87[YRI][hapmap];0.97[EUR][1000 genomes]
rs12377594	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1886589	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2182091	0.88[EUR][1000 genomes]
rs2209428	0.87[YRI][hapmap];0.98[EUR][1000 genomes]
rs2209431	0.95[EUR][1000 genomes]
rs2209432	0.95[EUR][1000 genomes]
rs2224954	0.87[YRI][hapmap];0.96[EUR][1000 genomes]
rs2224955	0.95[EUR][1000 genomes]
rs2296367	0.81[EUR][1000 genomes]
rs3808667	0.96[EUR][1000 genomes]
rs3808670	0.88[YRI][hapmap];0.98[EUR][1000 genomes]
rs3808673	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808675	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3808681	0.85[EUR][1000 genomes]
rs4302941	0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4348595	0.95[EUR][1000 genomes]
rs4961593	0.82[CHB][hapmap]
rs7041545	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9298783	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17754800-17772600	Weak transcription	Hela-S3	cervix
2	chr9:17764600-17782800	Weak transcription	Gastric	stomach
3	chr9:17769000-17769400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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