Variant report

Variant	rs7036904
Chromosome Location	chr9:17653469-17653470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10738482	0.82[CHB][hapmap]
rs10756894	0.82[ASN][1000 genomes]
rs10810822	0.81[CHB][hapmap]
rs10963210	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2182084	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2182086	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2182087	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs2209435	0.82[CHB][hapmap]
rs3780234	0.82[CHB][hapmap]
rs3780235	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs3808700	0.80[JPT][hapmap]
rs3808714	0.82[CHB][hapmap]
rs3808726	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs3808727	0.89[CHD][hapmap]
rs4418424	0.82[CHB][hapmap]
rs7020158	0.81[CHB][hapmap]
rs7350202	0.95[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7856894	0.82[CHB][hapmap]
rs7858624	0.82[CHB][hapmap]
rs7870919	0.82[CHB][hapmap]
rs7874762	0.82[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892674	chr9:17631186-17699981	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7036904	IFNA8	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17652200-17653600	Weak transcription	Fetal Brain Male	brain
2	chr9:17652200-17653600	Weak transcription	Fetal Brain Female	brain
3	chr9:17653200-17653800	Enhancers	Hela-S3	cervix
4	chr9:17653400-17654400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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