Variant report

Variant	rs7037580
Chromosome Location	chr9:15435428-15435429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:15435311-15435494	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RNU6-319P	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10738393	0.86[AFR][1000 genomes]
rs10738397	0.83[AFR][1000 genomes]
rs10756666	0.86[AFR][1000 genomes]
rs10962036	0.87[AFR][1000 genomes]
rs2382530	0.87[AFR][1000 genomes]
rs4741501	0.82[AFR][1000 genomes]
rs4741502	0.83[AFR][1000 genomes]
rs4741505	0.83[AFR][1000 genomes]
rs4741507	0.80[AFR][1000 genomes]
rs4741508	0.80[AFR][1000 genomes]
rs7026910	0.87[AFR][1000 genomes]
rs907075	0.86[AFR][1000 genomes]
rs907076	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1030287	chr9:15332709-15458001	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv831520	chr9:15404866-15444447	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15423600-15439000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:15424000-15443400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:15424000-15443600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:15425000-15437000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:15425400-15439000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:15426200-15441800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:15426400-15436000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:15426400-15439000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:15426400-15439800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:15426400-15441800	Weak transcription	Spleen	Spleen
11	chr9:15426400-15442800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:15426400-15443600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:15426400-15443600	Weak transcription	Gastric	stomach
14	chr9:15426400-15468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:15426600-15442400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:15426600-15443400	Weak transcription	Fetal Heart	heart
17	chr9:15427000-15436000	Weak transcription	Fetal Brain Female	brain
18	chr9:15427000-15443400	Weak transcription	NHEK	skin
19	chr9:15431000-15437600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr9:15431000-15439000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:15431200-15439200	Strong transcription	HepG2	liver
22	chr9:15431400-15436000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:15431400-15439800	Weak transcription	Hela-S3	cervix
24	chr9:15431400-15441800	Weak transcription	Lung	lung
25	chr9:15431400-15442400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:15431400-15442800	Weak transcription	Brain Angular Gyrus	brain
27	chr9:15431400-15443400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr9:15431400-15443400	Weak transcription	Pancreas	Pancrea
29	chr9:15431400-15443600	Weak transcription	Aorta	Aorta
30	chr9:15431400-15443600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:15431400-15443600	Weak transcription	Esophagus	oesophagus
32	chr9:15431400-15445800	Weak transcription	Right Ventricle	heart
33	chr9:15431400-15446000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:15431400-15447800	Weak transcription	Psoas Muscle	Psoas
35	chr9:15431600-15443400	Weak transcription	Stomach Mucosa	stomach
36	chr9:15432200-15438800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:15432200-15443600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr9:15432600-15436600	Strong transcription	HSMM	muscle
39	chr9:15432600-15437400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:15432800-15435600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:15432800-15438400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr9:15433000-15435600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:15433000-15437000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr9:15433000-15438000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:15433000-15438800	Strong transcription	Dnd41	blood
46	chr9:15433000-15440600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:15433000-15440600	Strong transcription	Fetal Intestine Large	intestine
48	chr9:15433200-15435800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:15433200-15437200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:15433200-15437400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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