Variant report

Variant	rs7040755
Chromosome Location	chr9:110522741-110522742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61734623..61736953-chr9:110522196..110523981,2	MCF-7	breast:
2	chr9:110517869..110520249-chr9:110520374..110523594,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512380	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10759258	0.95[EUR][1000 genomes]
rs10816568	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816569	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979040	0.96[EUR][1000 genomes]
rs1330149	0.95[EUR][1000 genomes]
rs1411357	0.95[CEU][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes]
rs1467311	0.95[CEU][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs1831382	0.96[EUR][1000 genomes]
rs2104759	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs2140483	0.96[EUR][1000 genomes]
rs4979370	0.95[CEU][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110514600-110523200	Weak transcription	K562	blood
2	chr9:110515400-110523000	Weak transcription	Left Ventricle	heart
3	chr9:110517800-110523000	Weak transcription	Small Intestine	intestine
4	chr9:110518000-110523600	Weak transcription	Adipose Nuclei	Adipose
5	chr9:110518200-110523000	Weak transcription	Stomach Mucosa	stomach
6	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:110518400-110522800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:110518400-110523000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:110519400-110522800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:110521200-110524000	Enhancers	Placenta	Placenta
11	chr9:110521200-110524400	Enhancers	Spleen	Spleen
12	chr9:110521600-110530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:110521800-110524000	Enhancers	Duodenum Mucosa	Duodenum
14	chr9:110522200-110523200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:110522200-110523600	Enhancers	GM12878-XiMat	blood
16	chr9:110522200-110524000	Enhancers	Right Atrium	heart
17	chr9:110522200-110524000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr9:110522600-110522800	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:110522600-110523000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:110522600-110523000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:110522600-110523200	Enhancers	Primary B cells from cord blood	blood
22	chr9:110522600-110523400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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