Variant report

Variant	rs7042123
Chromosome Location	chr9:71088807-71088808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10116868	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10123848	1.00[CEU][hapmap]
rs10511957	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs10511958	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10735596	0.86[JPT][hapmap]
rs10780955	0.82[CEU][hapmap]
rs10780960	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs10780962	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10780963	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10780967	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10868795	0.86[JPT][hapmap]
rs10868803	0.82[JPT][hapmap]
rs10868851	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10868852	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10868876	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10868877	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10868879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868913	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10868922	0.82[CEU][hapmap]
rs10868984	0.82[CEU][hapmap]
rs11142075	0.86[JPT][hapmap]
rs11142199	0.86[JPT][hapmap]
rs11142468	0.86[ASN][1000 genomes]
rs11142541	0.97[EUR][1000 genomes]
rs11142543	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142549	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11142616	0.82[CEU][hapmap]
rs11142650	0.85[JPT][hapmap]
rs11789244	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11792137	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs11794424	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs12000789	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12238439	1.00[CEU][hapmap]
rs12353500	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1353009	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1353010	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1492824	0.86[JPT][hapmap]
rs17053702	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs17054803	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs17056009	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs17059173	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs2026033	0.86[JPT][hapmap]
rs265087	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs35011246	0.91[ASN][1000 genomes]
rs4237244	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4237245	0.82[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4744594	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs4745041	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4745083	0.88[EUR][1000 genomes]
rs6560144	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020465	0.86[JPT][hapmap]
rs7022220	0.85[JPT][hapmap]
rs7022394	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7025140	0.86[JPT][hapmap]
rs7026163	1.00[ASN][1000 genomes]
rs7030076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031619	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7035038	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039149	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7039686	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042601	0.91[ASN][1000 genomes]
rs7042721	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7855134	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs7860270	0.85[ASN][1000 genomes]
rs7866604	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:71077600-71098800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
7	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
8	chr9:71081000-71098800	Weak transcription	Fetal Kidney	kidney
9	chr9:71083200-71091600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:71085800-71091400	Weak transcription	Fetal Lung	lung
11	chr9:71086200-71092000	Weak transcription	Right Atrium	heart
12	chr9:71087400-71090800	Weak transcription	Left Ventricle	heart
13	chr9:71087400-71091400	Weak transcription	Fetal Stomach	stomach
14	chr9:71087400-71092000	Weak transcription	Aorta	Aorta
15	chr9:71087400-71107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:71087600-71090600	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:71087600-71090600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:71088000-71090600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:71088200-71089800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:71088400-71089800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:71088600-71089400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:71088800-71091400	Weak transcription	Fetal Heart	heart

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