Variant report

Variant	rs7042721
Chromosome Location	chr9:71093667-71093668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10116868	0.88[ASN][1000 genomes]
rs10511957	0.87[EUR][1000 genomes]
rs10511958	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10780960	0.94[EUR][1000 genomes]
rs10780962	0.81[ASN][1000 genomes]
rs10780963	0.90[ASN][1000 genomes]
rs10780967	0.98[ASN][1000 genomes]
rs10868876	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10868877	0.81[ASN][1000 genomes]
rs10868879	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868913	0.81[EUR][1000 genomes]
rs11142541	0.97[EUR][1000 genomes]
rs11142543	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142549	0.81[ASN][1000 genomes]
rs11789244	0.88[EUR][1000 genomes]
rs11792137	0.97[EUR][1000 genomes]
rs11794424	0.87[EUR][1000 genomes]
rs12000789	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1353009	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1353010	0.97[EUR][1000 genomes]
rs17053702	0.87[EUR][1000 genomes]
rs17054803	0.87[EUR][1000 genomes]
rs17059173	0.87[EUR][1000 genomes]
rs265087	0.85[EUR][1000 genomes]
rs35011246	0.82[ASN][1000 genomes]
rs4237244	0.98[ASN][1000 genomes]
rs4237245	0.98[ASN][1000 genomes]
rs4745041	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4745083	0.88[EUR][1000 genomes]
rs6560144	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7022394	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7026163	0.91[ASN][1000 genomes]
rs7030076	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7031619	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7035038	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7039149	0.98[ASN][1000 genomes]
rs7039686	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7042123	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7042601	0.97[ASN][1000 genomes]
rs7855134	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:71077600-71098800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
6	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
7	chr9:71081000-71098800	Weak transcription	Fetal Kidney	kidney
8	chr9:71087400-71107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:71089800-71097000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:71090600-71094000	Enhancers	Colon Smooth Muscle	Colon
11	chr9:71091200-71095000	Weak transcription	Left Ventricle	heart
12	chr9:71091400-71093800	Enhancers	Fetal Stomach	stomach
13	chr9:71092000-71093800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:71092000-71093800	Enhancers	Aorta	Aorta
15	chr9:71092000-71101400	Weak transcription	Fetal Heart	heart
16	chr9:71092200-71095800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:71092200-71095800	Weak transcription	Fetal Lung	lung
18	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
19	chr9:71092400-71100800	Weak transcription	Ovary	ovary
20	chr9:71092600-71094800	Weak transcription	Right Atrium	heart
21	chr9:71093600-71095000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:71093600-71095600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:71093600-71101600	Weak transcription	Fetal Intestine Large	intestine

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