Variant report

Variant	rs7047223
Chromosome Location	chr9:16254419-16254420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11999421	1.00[AMR][1000 genomes]
rs12003391	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12004108	1.00[AMR][1000 genomes]
rs12006220	1.00[AMR][1000 genomes]
rs7038963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892642	chr9:16233085-16282979	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16252800-16261600	Weak transcription	Gastric	stomach
2	chr9:16253400-16256400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:16253800-16254800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:16253800-16254800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:16253800-16254800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:16253800-16255000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:16254000-16257600	Weak transcription	Ovary	ovary
8	chr9:16254200-16255000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:16254200-16258000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:16254400-16256600	Enhancers	Fetal Thymus	thymus
11	chr9:16254400-16262600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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