Variant report

Variant	rs7047514
Chromosome Location	chr9:17673601-17673602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10118867	0.86[ASN][1000 genomes]
rs11998777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12337611	0.86[ASN][1000 genomes]
rs12346670	0.86[ASN][1000 genomes]
rs12352499	0.86[ASN][1000 genomes]
rs12552706	0.85[AMR][1000 genomes]
rs12555674	0.94[MEX][hapmap]
rs16935876	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs16935877	0.94[MEX][hapmap];0.85[AMR][1000 genomes]
rs16935914	0.94[MEX][hapmap]
rs2209435	0.86[YRI][hapmap]
rs2209441	1.00[CHB][hapmap]
rs28656322	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3780230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3780234	0.86[YRI][hapmap]
rs3808714	0.86[YRI][hapmap]
rs4507864	0.88[MEX][hapmap]
rs5014596	1.00[CHB][hapmap]
rs6475169	1.00[CHB][hapmap]
rs7032215	1.00[CHB][hapmap]
rs7039627	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892674	chr9:17631186-17699981	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv982602	chr9:17671844-17676006	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17673600-17674200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:17673600-17674200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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