Variant report

Variant	rs7047895
Chromosome Location	chr9:116679181-116679182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10120883	0.86[CEU][hapmap]
rs10122390	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10123606	0.83[EUR][1000 genomes]
rs10513222	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10817531	0.85[EUR][1000 genomes]
rs10817532	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817535	0.81[EUR][1000 genomes]
rs10982007	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12343628	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13290326	0.83[ASN][1000 genomes]
rs1330169	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1888161	0.91[CHB][hapmap]
rs2065184	0.87[EUR][1000 genomes]
rs2183364	0.96[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2418259	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2900568	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2900569	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35189176	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4979294	0.83[EUR][1000 genomes]
rs4979295	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs4979297	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4979298	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7026176	0.86[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs7029830	0.90[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7038501	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7852787	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7853127	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7855811	0.93[CEU][hapmap]
rs871806	0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs871808	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs882980	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs944180	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9942970	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9942975	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116659400-116685400	Weak transcription	A549	lung
2	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116669400-116683000	Weak transcription	Osteobl	bone
7	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:116669800-116683600	Weak transcription	HUVEC	blood vessel
9	chr9:116672000-116682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:116672600-116684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:116672800-116681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:116674600-116679200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:116674600-116681000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:116674600-116682000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:116674800-116679800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:116674800-116681800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:116675000-116680200	Weak transcription	Brain Germinal Matrix	brain
19	chr9:116675200-116681000	Weak transcription	Brain Angular Gyrus	brain
20	chr9:116675200-116684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:116675400-116683200	Weak transcription	NHDF-Ad	bronchial
22	chr9:116675400-116684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:116675600-116680800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:116675600-116682000	Weak transcription	Brain Anterior Caudate	brain
25	chr9:116675600-116684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:116675800-116680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:116675800-116681000	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:116675800-116681000	Weak transcription	Right Atrium	heart
29	chr9:116675800-116681600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:116675800-116683400	Weak transcription	NHLF	lung
31	chr9:116675800-116683600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:116675800-116684600	Weak transcription	Esophagus	oesophagus
33	chr9:116675800-116686000	Weak transcription	Colonic Mucosa	Colon
34	chr9:116675800-116691800	Weak transcription	Lung	lung
35	chr9:116676000-116681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:116676000-116682400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:116676000-116683200	Weak transcription	Gastric	stomach
38	chr9:116676000-116684800	Weak transcription	Fetal Kidney	kidney
39	chr9:116676200-116679200	Weak transcription	Pancreas	Pancrea
40	chr9:116676200-116688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:116676400-116681200	Weak transcription	Adipose Nuclei	Adipose
42	chr9:116676400-116684200	Weak transcription	HSMMtube	muscle
43	chr9:116676400-116685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:116676600-116682000	Weak transcription	Liver	Liver
45	chr9:116676800-116681000	Weak transcription	Aorta	Aorta
46	chr9:116677200-116681400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:116677400-116681200	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:116677600-116681000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr9:116677600-116681200	Weak transcription	Psoas Muscle	Psoas
50	chr9:116677600-116683400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links