Variant report

Variant	rs7068127
Chromosome Location	chr10:52606488-52606489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10821854	0.91[JPT][hapmap]
rs10821859	0.91[JPT][hapmap]
rs10821876	0.82[CEU][hapmap];0.83[CHB][hapmap];0.96[MEX][hapmap]
rs10821887	0.83[CHB][hapmap];0.96[MEX][hapmap]
rs10821888	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs10994838	0.89[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs4245009	0.91[JPT][hapmap]
rs4268458	0.91[JPT][hapmap]
rs4935194	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs6479701	0.85[JPT][hapmap]
rs7913408	0.84[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52594800-52617200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:52598200-52622400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52602800-52619200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:52604000-52608200	Weak transcription	HepG2	liver
7	chr10:52604200-52608400	Weak transcription	Liver	Liver
8	chr10:52605600-52612000	Weak transcription	Pancreas	Pancrea
9	chr10:52606200-52607400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:52606400-52606600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:52606400-52606600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:52606400-52606800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:52606400-52607000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:52606400-52607000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:52606400-52607000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:52606400-52607000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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