Variant report
| Variant | rs7073617 |
|---|---|
| Chromosome Location | chr10:52822539-52822540 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-A1CF-1 | chr10:52822339-52822690 | ENSG00000223502.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10218858 | 0.83[AFR][1000 genomes] |
| rs10740127 | 0.88[ASN][1000 genomes] |
| rs10761774 | 0.95[ASN][1000 genomes] |
| rs10822169 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2660199 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2660200 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2660201 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2666536 | 0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2666545 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2666546 | 0.95[ASN][1000 genomes] |
| rs2666547 | 0.89[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2879546 | 0.83[AFR][1000 genomes] |
| rs4542348 | 0.83[AFR][1000 genomes] |
| rs4576762 | 0.94[ASN][1000 genomes] |
| rs4935009 | 0.95[ASN][1000 genomes] |
| rs4935218 | 0.95[ASN][1000 genomes] |
| rs4935222 | 0.80[EUR][1000 genomes] |
| rs5011544 | 0.86[AFR][1000 genomes] |
| rs7074981 | 0.88[ASN][1000 genomes] |
| rs7090485 | 0.80[EUR][1000 genomes] |
| rs7091200 | 0.81[EUR][1000 genomes] |
| rs7476372 | 0.86[AFR][1000 genomes] |
| rs7476747 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831873 | chr10:52710610-52899540 | Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv895394 | chr10:52793177-52866503 | Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1036645 | chr10:52804961-53159076 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
