Variant report

Variant	rs7074892
Chromosome Location	chr10:52840326-52840327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52839499..52841510-chr10:52846608..52849576,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10508935	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10740111	0.86[EUR][1000 genomes]
rs10740130	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761738	0.89[EUR][1000 genomes]
rs10761807	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761831	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10822188	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822189	0.97[EUR][1000 genomes]
rs10822194	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822197	0.81[EUR][1000 genomes]
rs10822198	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822210	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822211	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822229	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995458	0.89[EUR][1000 genomes]
rs10995473	0.84[EUR][1000 genomes]
rs10995526	0.90[EUR][1000 genomes]
rs10995620	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995651	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995655	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995788	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10995790	0.82[ASN][1000 genomes]
rs12218335	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220644	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12221226	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12415785	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767015	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913257	0.89[EUR][1000 genomes]
rs16913956	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983222	0.90[EUR][1000 genomes]
rs2339675	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660202	0.90[EUR][1000 genomes]
rs2666543	0.88[EUR][1000 genomes]
rs3964605	0.90[EUR][1000 genomes]
rs4622210	0.82[EUR][1000 genomes]
rs4935010	0.88[AFR][1000 genomes]
rs55767509	0.89[EUR][1000 genomes]
rs7084128	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084767	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097311	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904024	0.93[AFR][1000 genomes]
rs7912628	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414805	0.81[EUR][1000 genomes]
rs9414806	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414807	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9414808	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414809	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9414810	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415709	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415710	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415711	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633564	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52834800-52842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:52835600-52842400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:52836200-52841200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:52836200-52842800	Weak transcription	Psoas Muscle	Psoas
5	chr10:52836400-52847400	Weak transcription	Right Ventricle	heart
6	chr10:52836600-52841000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:52837200-52843000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:52837600-52842800	Weak transcription	NHDF-Ad	bronchial
10	chr10:52838200-52842800	Weak transcription	Left Ventricle	heart
11	chr10:52838800-52840600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:52838800-52840600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:52838800-52840600	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:52838800-52841200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:52838800-52841600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:52838800-52841600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:52839000-52840400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:52839000-52840600	Enhancers	Colon Smooth Muscle	Colon
19	chr10:52839000-52841000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:52839000-52841400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:52839000-52844000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:52839200-52840600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:52839200-52841800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr10:52839400-52840400	Enhancers	Right Atrium	heart
25	chr10:52839400-52840600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:52839400-52840600	Enhancers	Fetal Kidney	kidney
27	chr10:52839400-52841400	Enhancers	Fetal Brain Male	brain
28	chr10:52839600-52843000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:52839800-52840600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr10:52840000-52840400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:52840000-52840400	Flanking Active TSS	Aorta	Aorta
32	chr10:52840000-52840400	Enhancers	Fetal Brain Female	brain
33	chr10:52840000-52840600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:52840000-52840600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:52840000-52840600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:52840000-52840600	Enhancers	Fetal Lung	lung
37	chr10:52840000-52840600	Enhancers	Stomach Smooth Muscle	stomach
38	chr10:52840000-52840600	Genic enhancers	NHLF	lung
39	chr10:52840000-52843200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr10:52840200-52840400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:52840200-52840600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:52840200-52840600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr10:52840200-52840600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:52840200-52840600	Enhancers	Fetal Muscle Leg	muscle
45	chr10:52840200-52840600	Enhancers	Lung	lung
46	chr10:52840200-52841200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr10:52840200-52841600	Genic enhancers	Fetal Stomach	stomach
48	chr10:52840200-52842800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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