Variant report
| Variant | rs7078064 |
|---|---|
| Chromosome Location | chr10:52539970-52539971 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10994484 | 1.00[AMR][1000 genomes] |
| rs10994486 | 1.00[AMR][1000 genomes] |
| rs10994652 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12241999 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12242265 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12245610 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12246868 | 1.00[AMR][1000 genomes] |
| rs12247876 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12248117 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12248603 | 1.00[AMR][1000 genomes] |
| rs12250671 | 1.00[AMR][1000 genomes] |
| rs12250710 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12251965 | 1.00[AMR][1000 genomes] |
| rs12252902 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12255568 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12256013 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12257587 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12258558 | 1.00[AMR][1000 genomes] |
| rs12261175 | 1.00[AMR][1000 genomes] |
| rs12262186 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12263224 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12266425 | 1.00[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs12268784 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12268905 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs16909340 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4604823 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7077103 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7082887 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7094591 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7099856 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035197 | chr10:52446582-52622349 | Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv3326931 | chr10:52539746-52541744 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:52539800-52540600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
