Variant report

Variant	rs7078359
Chromosome Location	chr10:116733323-116733324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr10:116733177-116733416	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116731834..116734462-chr10:116737301..116739152,2	K562	blood:

Variant related genes	Relation type
RNU6-1121P	TF binding region

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1007847	1.00[EUR][1000 genomes]
rs10400160	1.00[EUR][1000 genomes]
rs10466204	1.00[EUR][1000 genomes]
rs10885652	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10885665	1.00[EUR][1000 genomes]
rs11196974	1.00[EUR][1000 genomes]
rs11197025	1.00[EUR][1000 genomes]
rs11197057	1.00[EUR][1000 genomes]
rs11197058	1.00[EUR][1000 genomes]
rs11197060	1.00[EUR][1000 genomes]
rs11197061	1.00[EUR][1000 genomes]
rs11197067	1.00[EUR][1000 genomes]
rs11197070	1.00[EUR][1000 genomes]
rs11197082	1.00[EUR][1000 genomes]
rs11197089	1.00[EUR][1000 genomes]
rs11197090	1.00[EUR][1000 genomes]
rs11197092	1.00[EUR][1000 genomes]
rs11197096	1.00[EUR][1000 genomes]
rs11197097	1.00[EUR][1000 genomes]
rs11197104	1.00[EUR][1000 genomes]
rs12245856	1.00[EUR][1000 genomes]
rs12248612	1.00[EUR][1000 genomes]
rs12248846	1.00[EUR][1000 genomes]
rs12252344	1.00[EUR][1000 genomes]
rs12255157	1.00[EUR][1000 genomes]
rs12264153	1.00[EUR][1000 genomes]
rs12267097	1.00[EUR][1000 genomes]
rs1264776	1.00[TSI][hapmap]
rs2197305	1.00[EUR][1000 genomes]
rs5023856	1.00[EUR][1000 genomes]
rs55954958	1.00[EUR][1000 genomes]
rs55993822	1.00[EUR][1000 genomes]
rs56044402	1.00[EUR][1000 genomes]
rs56866557	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57000201	1.00[EUR][1000 genomes]
rs57423028	1.00[EUR][1000 genomes]
rs57707843	1.00[EUR][1000 genomes]
rs58042685	1.00[EUR][1000 genomes]
rs58836644	1.00[EUR][1000 genomes]
rs59741104	1.00[EUR][1000 genomes]
rs60460075	1.00[EUR][1000 genomes]
rs60791428	1.00[EUR][1000 genomes]
rs60927673	1.00[EUR][1000 genomes]
rs62641708	1.00[EUR][1000 genomes]
rs7069069	1.00[EUR][1000 genomes]
rs7070487	1.00[EUR][1000 genomes]
rs7074608	1.00[EUR][1000 genomes]
rs7077957	1.00[EUR][1000 genomes]
rs7082007	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7082100	1.00[EUR][1000 genomes]
rs7084277	1.00[EUR][1000 genomes]
rs7098585	1.00[EUR][1000 genomes]
rs74158064	1.00[EUR][1000 genomes]
rs74158066	1.00[EUR][1000 genomes]
rs74158068	1.00[EUR][1000 genomes]
rs74158070	1.00[EUR][1000 genomes]
rs74158071	1.00[EUR][1000 genomes]
rs74158072	1.00[EUR][1000 genomes]
rs74158073	1.00[EUR][1000 genomes]
rs74158075	1.00[EUR][1000 genomes]
rs74158076	1.00[EUR][1000 genomes]
rs74158079	1.00[EUR][1000 genomes]
rs74158081	1.00[EUR][1000 genomes]
rs74158090	1.00[EUR][1000 genomes]
rs74159814	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159823	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159827	1.00[EUR][1000 genomes]
rs7894112	1.00[EUR][1000 genomes]
rs7894976	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7897375	1.00[EUR][1000 genomes]
rs7899382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900110	1.00[EUR][1000 genomes]
rs7906377	1.00[TSI][hapmap]
rs7906551	1.00[EUR][1000 genomes]
rs7920152	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1039002	chr10:116643095-116879483	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv2761634	chr10:116643095-116879495	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1045654	chr10:116654574-116879483	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043242	chr10:116655057-116883386	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv831997	chr10:116689552-116855698	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7078359	ABLIM1	cis	lymphoblastoid	seeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116698800-116763600	Weak transcription	Esophagus	oesophagus
2	chr10:116699600-116736400	Weak transcription	NHLF	lung
3	chr10:116703600-116740800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116703600-116747800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:116705400-116735400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:116705400-116739400	Weak transcription	Thymus	Thymus
7	chr10:116707000-116744200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:116707000-116745600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:116708800-116742000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:116710800-116741200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:116713800-116734200	Weak transcription	Psoas Muscle	Psoas
12	chr10:116714200-116739400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:116716400-116743200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:116718000-116737400	Weak transcription	NHDF-Ad	bronchial
15	chr10:116718000-116747600	Weak transcription	Osteobl	bone
16	chr10:116720000-116736400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:116722800-116734000	Weak transcription	Brain Angular Gyrus	brain
18	chr10:116722800-116744400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:116722800-116748000	Weak transcription	Aorta	Aorta
20	chr10:116723000-116733400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:116723000-116734000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:116723000-116734000	Weak transcription	Fetal Kidney	kidney
23	chr10:116723000-116734800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:116723000-116736600	Weak transcription	Fetal Thymus	thymus
25	chr10:116723000-116739200	Weak transcription	Fetal Intestine Small	intestine
26	chr10:116723000-116739800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:116723000-116741800	Weak transcription	NHEK	skin
28	chr10:116723000-116742000	Weak transcription	Fetal Intestine Large	intestine
29	chr10:116723000-116742200	Weak transcription	Lung	lung
30	chr10:116723000-116742400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:116723000-116743400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:116723000-116744000	Weak transcription	Gastric	stomach
33	chr10:116723000-116760800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:116723200-116734200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:116723200-116742000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:116723200-116742200	Weak transcription	HMEC	breast
37	chr10:116723200-116743600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:116723600-116734800	Weak transcription	Liver	Liver
39	chr10:116723600-116741400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:116723600-116744200	Weak transcription	NH-A	brain
41	chr10:116723800-116734200	Weak transcription	Brain Anterior Caudate	brain
42	chr10:116723800-116734800	Weak transcription	Primary B cells from cord blood	blood
43	chr10:116723800-116734800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:116723800-116741000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:116723800-116741400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:116724000-116734200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:116724000-116734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:116724000-116736600	Weak transcription	Fetal Lung	lung
49	chr10:116724000-116742000	Weak transcription	A549	lung
50	chr10:116724000-116742600	Weak transcription	Brain Cingulate Gyrus	brain

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