Variant report

Variant	rs7078622
Chromosome Location	chr10:50571941-50571942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10857481	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12261515	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs2889780	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4838506	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7903692	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs7922858	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv526843	chr10:50570544-50585177	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50567600-50572000	Enhancers	Pancreas	Pancrea
2	chr10:50568800-50573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:50569400-50575600	Weak transcription	Right Atrium	heart
4	chr10:50569600-50575800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50569600-50577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:50569800-50572000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:50569800-50572200	Enhancers	GM12878-XiMat	blood
8	chr10:50570200-50572400	Enhancers	HepG2	liver
9	chr10:50570200-50575600	Weak transcription	Right Ventricle	heart
10	chr10:50571200-50575600	Weak transcription	Left Ventricle	heart
11	chr10:50571600-50573800	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links