Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:25833305..25835524-chr10:25841251..25843498,2	K562	blood:
2	chr10:25835478..25839771-chr10:25841392..25844555,4	K562	blood:
3	chr10:25836858..25839438-chr10:25841392..25844973,3	K562	blood:
4	chr10:25833305..25835212-chr10:25841456..25843498,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764559	0.95[ASN][1000 genomes]
rs10764561	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10764562	0.93[ASN][1000 genomes]
rs10828819	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828820	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828824	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828826	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828827	0.91[ASN][1000 genomes]
rs11014612	0.93[ASN][1000 genomes]
rs11014613	0.93[ASN][1000 genomes]
rs12245398	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414040	0.93[ASN][1000 genomes]
rs1414044	0.93[ASN][1000 genomes]
rs1414045	0.93[ASN][1000 genomes]
rs1414046	0.93[ASN][1000 genomes]
rs6482496	0.90[ASN][1000 genomes]
rs7088106	0.93[ASN][1000 genomes]
rs7100209	0.93[ASN][1000 genomes]
rs7101141	1.00[ASN][1000 genomes]
rs7358105	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7899012	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7911256	0.93[ASN][1000 genomes]
rs7915074	0.94[ASN][1000 genomes]
rs7917704	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7922110	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25836800-25844800	Weak transcription	NH-A	brain
2	chr10:25839200-25843600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25841400-25843000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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