Variant report

Variant	rs7080019
Chromosome Location	chr10:25968240-25968241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10764579	0.88[EUR][1000 genomes]
rs10828844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828846	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828847	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828848	0.88[EUR][1000 genomes]
rs10828849	0.88[EUR][1000 genomes]
rs11014679	0.88[EUR][1000 genomes]
rs16926240	0.95[ASN][1000 genomes]
rs16926262	0.90[ASN][1000 genomes]
rs16926264	0.90[ASN][1000 genomes]
rs17737307	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2290167	0.95[CEU][hapmap];0.92[CHB][hapmap];0.87[MEX][hapmap];0.89[EUR][1000 genomes]
rs2367978	0.81[AMR][1000 genomes]
rs2367979	0.89[ASN][1000 genomes]
rs4749059	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55752620	0.95[ASN][1000 genomes]
rs61613087	0.95[ASN][1000 genomes]
rs61846904	0.95[ASN][1000 genomes]
rs61846907	0.95[ASN][1000 genomes]
rs61846908	0.90[ASN][1000 genomes]
rs62000980	0.88[ASN][1000 genomes]
rs6482509	0.95[ASN][1000 genomes]
rs6482511	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7076933	0.95[ASN][1000 genomes]
rs7098875	0.95[ASN][1000 genomes]
rs7099373	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72796368	0.93[ASN][1000 genomes]
rs72796380	0.93[ASN][1000 genomes]
rs73610338	0.90[ASN][1000 genomes]
rs7902742	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7916640	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9664692	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7080019	BMI1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25962800-25993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25968000-25970400	Enhancers	Cortex derived primary cultured neurospheres	brain

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