Variant report

Variant	rs7083820
Chromosome Location	chr10:53015686-53015687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11816607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16913168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17173638	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097901	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831874	chr10:53010357-53195508	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53006200-53015800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:53006800-53017000	Weak transcription	Aorta	Aorta
3	chr10:53006800-53017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:53007400-53016600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:53010600-53017200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:53011200-53016200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:53011200-53017200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:53012000-53017400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:53013000-53017000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:53013000-53017000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:53013000-53022800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:53013600-53017000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:53015000-53015800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:53015000-53015800	Enhancers	Fetal Muscle Leg	muscle
15	chr10:53015200-53015800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:53015200-53016000	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:53015400-53017000	Weak transcription	NHLF	lung
18	chr10:53015600-53017200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:53015600-53019200	Weak transcription	Psoas Muscle	Psoas
20	chr10:53015600-53022600	Weak transcription	H9 Cell Line	embryonic stem cell

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