Variant report

Variant	rs7086651
Chromosome Location	chr10:119135892-119135893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr10:119135630-119136354	K562	blood:	n/a	n/a
2	TCF12	chr10:119135787-119136148	H1-hESC	embryonic stem cell:	n/a	chr10:119136074-119136084
3	CBX3	chr10:119135884-119136291	K562	blood:	n/a	n/a
4	POLR2A	chr10:119134020-119136098	GM19099	blood:	n/a	n/a
5	KAP1	chr10:119135111-119136224	HEK293	kidney:	n/a	n/a
6	TBP	chr10:119134660-119136405	K562	blood:	n/a	n/a
7	POLR2A	chr10:119134685-119136188	K562	blood:	n/a	n/a
8	POLR2A	chr10:119133499-119135934	GM12892	blood:	n/a	n/a
9	POLR2A	chr10:119133686-119136261	K562	blood:	n/a	n/a
10	CEBPD	chr10:119135889-119136303	K562	blood:	n/a	n/a
11	POLR2A	chr10:119134619-119136220	HEK293	kidney:	n/a	n/a
12	TEAD4	chr10:119135725-119136307	K562	blood:	n/a	n/a
13	MXI1	chr10:119133137-119136276	SK-N-SH	brain:	n/a	chr10:119135168-119135177 chr10:119135168-119135177 chr10:119135166-119135175
14	E2F6	chr10:119134787-119136402	H1-hESC	embryonic stem cell:	n/a	chr10:119135248-119135257 chr10:119135585-119135599 chr10:119135018-119135027 chr10:119135156-119135165 chr10:119134956-119134966 chr10:119134831-119134841 chr10:119134953-119134963 chr10:119135020-119135029
15	MAX	chr10:119134816-119136312	H1-hESC	embryonic stem cell:	n/a	chr10:119136126-119136135 chr10:119135166-119135177 chr10:119136127-119136134 chr10:119135167-119135176 chr10:119135166-119135176 chr10:119135167-119135176 chr10:119135166-119135177 chr10:119135167-119135176 chr10:119135167-119135177 chr10:119135126-119135135 chr10:119136125-119136135
16	POLR2A	chr10:119132277-119136195	MCF10A-Er-Src	breast:	n/a	n/a
17	ATF1	chr10:119135805-119136294	K562	blood:	n/a	n/a
18	PML	chr10:119135875-119136233	K562	blood:	n/a	n/a
19	POLR2A	chr10:119134537-119136276	K562	blood:	n/a	n/a
20	MXI1	chr10:119134532-119136261	HepG2	liver:	n/a	chr10:119135168-119135177 chr10:119135168-119135177 chr10:119135166-119135175
21	TEAD4	chr10:119135844-119136308	K562	blood:	n/a	n/a
22	TCF7L2	chr10:119134590-119136096	Hela-S3	cervix:	n/a	n/a
23	TBP	chr10:119135869-119136071	H1-hESC	embryonic stem cell:	n/a	n/a
24	SIN3AK20	chr10:119135875-119136189	K562	blood:	n/a	n/a
25	MXI1	chr10:119135814-119136210	K562	blood:	n/a	n/a
26	HMGN3	chr10:119133676-119136423	K562	blood:	n/a	n/a
27	POLR2A	chr10:119135056-119136281	K562	blood:	n/a	n/a
28	TEAD4	chr10:119135753-119136206	H1-hESC	embryonic stem cell:	n/a	n/a
29	JUND	chr10:119134692-119136314	K562	blood:	n/a	chr10:119135019-119135028
30	SIN3AK20	chr10:119135558-119136159	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr10:119133445-119135968	GM19193	blood:	n/a	n/a
32	TRIM28	chr10:119135795-119136395	K562	blood:	n/a	n/a
33	POLR2A	chr10:119135863-119136302	SK-N-MC	brain:	n/a	n/a
34	MYC	chr10:119135882-119136295	K562	blood:	n/a	chr10:119136126-119136135 chr10:119136127-119136134 chr10:119136125-119136135
35	SIN3A	chr10:119133323-119136257	H1-hESC	embryonic stem cell:	n/a	chr10:119135168-119135177 chr10:119133735-119133745 chr10:119135427-119135441 chr10:119133731-119133744 chr10:119135246-119135257
36	EP300	chr10:119135808-119136313	K562	blood:	n/a	n/a
37	POLR2A	chr10:119133595-119136099	GM18526	blood:	n/a	n/a
38	CHD2	chr10:119134926-119136162	K562	blood:	n/a	n/a
39	POLR2A	chr10:119134241-119136283	K562	blood:	n/a	n/a
40	NR2F2	chr10:119135752-119136381	K562	blood:	n/a	n/a
41	E2F6	chr10:119133690-119136346	K562	blood:	n/a	chr10:119135248-119135257 chr10:119135585-119135599 chr10:119135018-119135027 chr10:119135156-119135165 chr10:119134956-119134966 chr10:119134831-119134841 chr10:119134953-119134963 chr10:119135020-119135029
42	STAT5A	chr10:119135843-119136275	K562	blood:	n/a	chr10:119136000-119136008
43	POLR2A	chr10:119133696-119136148	GM18951	blood:	n/a	n/a
44	POLR2A	chr10:119134657-119136058	GM12878	blood:	n/a	n/a
45	CEBPB	chr10:119134864-119136299	Hela-S3	cervix:	n/a	n/a
46	POLR2A	chr10:119133301-119136283	HL-60	blood:	n/a	n/a
47	MAX	chr10:119134508-119136377	K562	blood:	n/a	chr10:119136126-119136135 chr10:119135166-119135177 chr10:119136127-119136134 chr10:119135167-119135176 chr10:119135166-119135176 chr10:119135167-119135176 chr10:119135166-119135177 chr10:119135167-119135176 chr10:119135167-119135177 chr10:119135126-119135135 chr10:119136125-119136135
48	CEBPD	chr10:119135838-119136310	K562	blood:	n/a	n/a
49	NR3C1	chr10:119135849-119136321	A549	lung:	n/a	chr10:119136123-119136144
50	GATA1	chr10:119134690-119136487	K562	blood:	n/a	chr10:119135979-119135992

No.	Distal block	Cell Line	Cell type
1	chr10:119135075..119137421-chr10:119139743..119143361,4	K562	blood:
2	chr10:119135075..119137612-chr10:119151953..119153760,2	K562	blood:
3	chr10:119135318..119137458-chr10:119181859..119184416,2	K562	blood:

Variant related genes	Relation type
PDZD8	TF binding region

Extended variants
information (count: 140 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1008448	0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10377	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs10787770	0.90[ASN][1000 genomes]
rs10787771	0.82[ASN][1000 genomes]
rs10886054	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs10886061	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10886062	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10886063	0.90[ASN][1000 genomes]
rs10886064	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10886065	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197960	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197968	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197969	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197970	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197974	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197975	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197976	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197977	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11498892	0.89[ASN][1000 genomes]
rs12243133	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12243628	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12247698	0.90[ASN][1000 genomes]
rs12256994	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12263512	0.90[CEU][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12265713	0.88[CEU][hapmap]
rs12269460	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12414644	0.89[CEU][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12569963	0.82[ASN][1000 genomes]
rs12571779	0.89[CEU][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12573009	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs14240	0.86[CHB][hapmap]
rs1468563	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs181440	0.87[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs1860407	0.85[ASN][1000 genomes]
rs1935166	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935168	0.90[ASN][1000 genomes]
rs1954212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1954213	0.90[ASN][1000 genomes]
rs2052075	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2096112	0.82[ASN][1000 genomes]
rs2153714	0.89[CEU][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2244249	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2244375	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2255062	0.80[ASN][1000 genomes]
rs2255367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2275670	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275671	0.94[ASN][1000 genomes]
rs2420457	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2429505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2429508	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2487692	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2490626	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2490628	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs2490631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532781	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532783	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532785	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532786	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532787	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532788	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532789	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532792	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532793	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532795	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532809	0.89[CEU][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap]
rs2532813	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532815	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532817	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532834	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532835	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532839	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs2532841	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532844	0.87[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.96[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794414	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2794416	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794418	0.82[ASN][1000 genomes]
rs2794419	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2794421	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2794435	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2794436	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803801	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803802	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803803	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2803804	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2803807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803809	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2803810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2901123	0.82[ASN][1000 genomes]
rs34247425	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3523	0.85[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363227	0.89[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs363228	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs363230	0.87[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs363235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363236	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363238	0.89[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs363240	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363271	0.89[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap]
rs363272	0.89[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];0.81[YRI][hapmap]
rs363275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs363276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363282	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363303	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs3814229	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4751623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752051	0.80[JPT][hapmap]
rs4752054	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752056	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6585431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7070594	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7072785	0.96[ASN][1000 genomes]
rs7087395	0.90[ASN][1000 genomes]
rs7088401	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72825530	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7897828	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7898092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7900191	0.92[ASN][1000 genomes]
rs7901203	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7902237	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs887341	0.89[CEU][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs979992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405759	chr10:119133487-119136335	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv3448575	chr10:119133637-119136185	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7086651	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119132200-119136200	Active TSS	Aorta	Aorta
2	chr10:119132400-119136000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:119132400-119136000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr10:119132400-119136000	Active TSS	Psoas Muscle	Psoas
5	chr10:119132800-119136000	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr10:119133000-119136200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr10:119133000-119136200	Active TSS	Primary T cells from cord blood	blood
8	chr10:119133600-119136000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:119134200-119136000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:119135000-119136000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:119135200-119136000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr10:119135200-119136000	Flanking Active TSS	Placenta	Placenta
13	chr10:119135200-119136200	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr10:119135200-119136200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr10:119135200-119136200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:119135400-119136000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:119135400-119136000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:119135400-119136000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:119135400-119136000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:119135400-119136000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
21	chr10:119135400-119136000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
22	chr10:119135400-119136000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr10:119135400-119136000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr10:119135400-119136000	Flanking Active TSS	Liver	Liver
25	chr10:119135400-119136000	Flanking Active TSS	Esophagus	oesophagus
26	chr10:119135400-119136000	Flanking Active TSS	Fetal Muscle Leg	muscle
27	chr10:119135400-119136000	Flanking Active TSS	Pancreas	Pancrea
28	chr10:119135400-119136000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr10:119135400-119136000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr10:119135400-119136000	Flanking Active TSS	HMEC	breast
31	chr10:119135400-119136200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:119135400-119136200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr10:119135400-119136200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr10:119135400-119136200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:119135400-119136200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:119135400-119136200	Flanking Active TSS	Colonic Mucosa	Colon
37	chr10:119135400-119136200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr10:119135400-119136200	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr10:119135400-119136200	Flanking Bivalent TSS/Enh	Dnd41	blood
40	chr10:119135400-119136200	Flanking Active TSS	HUVEC	blood vessel
41	chr10:119135600-119136000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr10:119135600-119136000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
43	chr10:119135600-119136000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:119135600-119136000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
45	chr10:119135600-119136000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr10:119135600-119136000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:119135600-119136000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr10:119135600-119136000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:119135600-119136000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr10:119135600-119136000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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