Variant report

Variant	rs7088401
Chromosome Location	chr10:119130996-119130997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119130955..119133218-chr10:119134123..119136577,2	K562	blood:
2	chr10:119130158..119132080-chr10:119133751..119135929,3	MCF-7	breast:
3	chr10:119129127..119131284-chr10:119133057..119134797,2	MCF-7	breast:
4	chr10:119090115..119092747-chr10:119129531..119131567,2	MCF-7	breast:
5	chr10:119129524..119131714-chr10:119168378..119170724,2	K562	blood:
6	chr10:119124009..119125919-chr10:119130332..119132038,2	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1008448	0.85[ASN][1000 genomes]
rs10787770	0.93[ASN][1000 genomes]
rs10886061	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10886062	0.85[ASN][1000 genomes]
rs10886063	0.93[ASN][1000 genomes]
rs10886064	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10886065	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197960	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197968	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197969	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197970	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197975	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197976	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197977	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197981	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11498892	0.92[ASN][1000 genomes]
rs12243133	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12243628	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12247698	0.93[ASN][1000 genomes]
rs12256994	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12263512	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12269460	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12413507	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414644	0.83[ASN][1000 genomes]
rs12569963	0.85[ASN][1000 genomes]
rs12571779	0.83[ASN][1000 genomes]
rs12573009	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468563	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs181440	0.86[ASN][1000 genomes]
rs1860407	0.82[ASN][1000 genomes]
rs1935166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935167	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1935168	0.93[ASN][1000 genomes]
rs1954212	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1954213	0.88[ASN][1000 genomes]
rs2052075	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2096112	0.85[ASN][1000 genomes]
rs2153714	0.80[ASN][1000 genomes]
rs2244249	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2244375	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2255062	0.83[ASN][1000 genomes]
rs2255367	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275670	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275671	0.91[ASN][1000 genomes]
rs2420457	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2429505	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2429508	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2487692	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2490626	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2490631	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532781	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532782	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532783	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532784	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532785	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532786	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532787	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532788	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532789	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532792	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532793	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532795	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532796	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532813	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532815	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532817	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532834	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532835	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532836	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532838	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532839	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532841	0.85[ASN][1000 genomes]
rs2532842	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532844	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794414	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2794416	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794418	0.85[ASN][1000 genomes]
rs2794419	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794421	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2794435	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794436	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803799	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803801	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803802	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803803	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2803804	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2803807	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803809	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803810	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803816	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2901123	0.85[ASN][1000 genomes]
rs34247425	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3523	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363235	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363236	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363240	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs363242	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs363243	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs363275	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs363276	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363278	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363282	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3814229	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814230	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4751623	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4752054	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585431	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7070594	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7072027	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072785	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7086651	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7087395	0.93[ASN][1000 genomes]
rs72825530	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7897828	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898092	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7900191	0.89[ASN][1000 genomes]
rs7901203	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902237	0.89[ASN][1000 genomes]
rs887341	0.85[ASN][1000 genomes]
rs979992	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7088401	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:119112600-119132800	Weak transcription	Gastric	stomach
5	chr10:119120000-119132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:119123800-119131000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:119123800-119131000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:119123800-119131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:119124000-119132000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:119124200-119131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:119124200-119131000	Weak transcription	Small Intestine	intestine
12	chr10:119124200-119131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:119124400-119131000	Weak transcription	NHLF	lung
14	chr10:119124400-119131200	Weak transcription	Colonic Mucosa	Colon
15	chr10:119124400-119131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:119124400-119132000	Weak transcription	Right Ventricle	heart
17	chr10:119124600-119131400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:119124800-119131800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:119125200-119131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:119125400-119131400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:119125800-119131000	Weak transcription	NH-A	brain
22	chr10:119126200-119131000	Weak transcription	Right Atrium	heart
23	chr10:119126200-119131000	Weak transcription	HUVEC	blood vessel
24	chr10:119126400-119131400	Weak transcription	Fetal Kidney	kidney
25	chr10:119126600-119131400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:119126600-119131400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:119126800-119132800	Weak transcription	Lung	lung
28	chr10:119127400-119132800	Weak transcription	Fetal Thymus	thymus
29	chr10:119127800-119131000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:119128400-119131000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:119128600-119133000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:119128800-119133200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:119128800-119133200	Weak transcription	Placenta	Placenta
34	chr10:119129000-119131000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:119129000-119131400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:119129000-119131400	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr10:119129000-119132000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:119129000-119132200	Enhancers	Fetal Brain Male	brain
39	chr10:119129000-119132800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr10:119129200-119131400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr10:119129200-119131400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:119129200-119131600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr10:119129200-119132000	Enhancers	Brain Germinal Matrix	brain
44	chr10:119129200-119132000	Enhancers	Osteobl	bone
45	chr10:119129200-119132600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr10:119129200-119133200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr10:119129400-119131000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:119129400-119131400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr10:119129400-119132200	Weak transcription	Thymus	Thymus
50	chr10:119129600-119131200	Weak transcription	NHDF-Ad	bronchial

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