Variant report

Variant	rs7090929
Chromosome Location	chr10:25788433-25788434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508698	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11014579	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014592	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11014593	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11014627	0.82[CEU][hapmap]
rs1329248	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16925980	0.85[MKK][hapmap]
rs16926123	0.82[CEU][hapmap];0.88[TSI][hapmap]
rs16926129	0.82[CEU][hapmap]
rs1855674	1.00[EUR][1000 genomes]
rs3886351	0.87[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs4316420	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs67192203	0.98[EUR][1000 genomes]
rs72788296	0.83[EUR][1000 genomes]
rs7902586	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7090929	FABP4	trans	brain	seeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25783200-25788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:25784200-25788600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:25785800-25788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:25785800-25791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:25786000-25791000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:25786200-25788600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:25786400-25790400	Weak transcription	Fetal Heart	heart
10	chr10:25786800-25790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:25787600-25788800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:25787600-25789400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:25788000-25788600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:25788000-25790600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:25788000-25791800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:25788200-25788800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr10:25788200-25789000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:25788200-25789000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:25788200-25789200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:25788400-25788600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:25788400-25789000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr10:25788400-25789200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr10:25788400-25790400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:25788400-25790800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:25788400-25792000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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