Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10399963	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs10400056	1.00[AFR][1000 genomes]
rs10400160	1.00[AFR][1000 genomes]
rs10885652	1.00[TSI][hapmap]
rs11197113	1.00[TSI][hapmap]
rs11819446	0.80[MKK][hapmap];1.00[TSI][hapmap]
rs12098502	0.83[AFR][1000 genomes]
rs1264776	1.00[TSI][hapmap]
rs28564357	0.83[AFR][1000 genomes]
rs6585330	0.89[YRI][hapmap]
rs7069988	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs7077627	1.00[AFR][1000 genomes]
rs7082007	1.00[TSI][hapmap]
rs7082592	1.00[AFR][1000 genomes]
rs7097441	0.83[AFR][1000 genomes]
rs7098585	1.00[AFR][1000 genomes]
rs7893964	1.00[ASW][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7896852	0.89[YRI][hapmap]
rs7899771	1.00[AFR][1000 genomes]
rs7906377	1.00[ASW][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs7906551	1.00[AFR][1000 genomes]
rs7907668	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7908005	1.00[ASW][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7910204	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7913288	1.00[ASW][hapmap];0.96[AFR][1000 genomes]
rs7917672	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7918291	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7919754	0.88[YRI][hapmap]
rs7920260	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116979600-117000200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116981000-117010800	Weak transcription	Aorta	Aorta

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