Variant report

Variant	rs7096083
Chromosome Location	chr10:116990156-116990157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12266550	1.00[EUR][1000 genomes]
rs1264760	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[EUR][1000 genomes]
rs1264766	1.00[EUR][1000 genomes]
rs1264777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1264779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1264790	1.00[EUR][1000 genomes]
rs1264792	1.00[EUR][1000 genomes]
rs1264800	1.00[EUR][1000 genomes]
rs1264804	1.00[EUR][1000 genomes]
rs1268462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1268917	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1314595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1389645	1.00[EUR][1000 genomes]
rs1494171	1.00[EUR][1000 genomes]
rs4391748	1.00[EUR][1000 genomes]
rs57996160	1.00[EUR][1000 genomes]
rs596330	1.00[EUR][1000 genomes]
rs597657	1.00[EUR][1000 genomes]
rs606534	1.00[EUR][1000 genomes]
rs60858345	1.00[EUR][1000 genomes]
rs612233	1.00[EUR][1000 genomes]
rs6585324	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs6585325	1.00[EUR][1000 genomes]
rs6585326	1.00[EUR][1000 genomes]
rs675780	1.00[EUR][1000 genomes]
rs7071026	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MKK][hapmap];1.00[EUR][1000 genomes]
rs7081737	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086259	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089161	1.00[EUR][1000 genomes]
rs7100002	1.00[EUR][1000 genomes]
rs73365481	1.00[EUR][1000 genomes]
rs765492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896862	1.00[EUR][1000 genomes]
rs7908792	1.00[EUR][1000 genomes]
rs7921195	1.00[EUR][1000 genomes]
rs7921716	1.00[EUR][1000 genomes]
rs7923284	0.85[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116979600-117000200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116981000-117010800	Weak transcription	Aorta	Aorta

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