Variant report

Variant	rs7096755
Chromosome Location	chr10:50735635-50735636
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50727908..50731629-chr10:50735183..50738136,3	MCF-7	breast:
2	chr10:50729482..50733326-chr10:50734602..50739448,5	K562	blood:

Variant related genes	Relation type
ENSG00000243251	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1012553	0.89[ASN][1000 genomes]
rs1012554	0.89[ASN][1000 genomes]
rs10776574	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10776576	0.85[ASN][1000 genomes]
rs10857503	0.80[ASN][1000 genomes]
rs11101140	0.83[ASN][1000 genomes]
rs11101148	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11594945	0.80[ASN][1000 genomes]
rs11815415	0.80[ASN][1000 genomes]
rs12218455	0.80[ASN][1000 genomes]
rs12220258	0.81[ASN][1000 genomes]
rs1917799	0.80[ASN][1000 genomes]
rs1924488	0.85[ASN][1000 genomes]
rs1924489	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2209281	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2228524	0.89[ASN][1000 genomes]
rs2228528	0.89[ASN][1000 genomes]
rs2377938	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2889791	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3750745	0.80[ASN][1000 genomes]
rs3763730	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3793786	0.88[ASN][1000 genomes]
rs3793788	0.87[ASN][1000 genomes]
rs4012459	0.80[ASN][1000 genomes]
rs4240505	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4240506	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4240507	0.86[ASN][1000 genomes]
rs4240508	0.85[ASN][1000 genomes]
rs4253009	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4253024	0.89[ASN][1000 genomes]
rs4253082	0.87[ASN][1000 genomes]
rs4253217	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4253226	0.81[ASN][1000 genomes]
rs4838516	0.82[EUR][1000 genomes]
rs4838518	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4838519	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs57761316	0.80[ASN][1000 genomes]
rs59219652	0.80[ASN][1000 genomes]
rs61288726	0.80[ASN][1000 genomes]
rs6537537	0.80[ASN][1000 genomes]
rs7070896	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7082895	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7087700	0.85[ASN][1000 genomes]
rs7100734	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7899981	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7901433	0.80[ASN][1000 genomes]
rs7904860	0.83[EUR][1000 genomes]
rs7906303	0.82[EUR][1000 genomes]
rs7907557	0.84[EUR][1000 genomes]
rs7908359	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7922756	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7923874	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs932735	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50717200-50736200	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:50717200-50746000	Weak transcription	Fetal Heart	heart
3	chr10:50717400-50737000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:50720400-50746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:50723000-50741000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:50723200-50741000	Strong transcription	Primary T cells from cord blood	blood
7	chr10:50723200-50741000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:50723200-50741000	Strong transcription	HMEC	breast
9	chr10:50723200-50741800	Strong transcription	Osteobl	bone
10	chr10:50723400-50739600	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr10:50723400-50741000	Strong transcription	Fetal Intestine Large	intestine
12	chr10:50723400-50741000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr10:50723400-50741600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:50723400-50741600	Strong transcription	NHEK	skin
15	chr10:50723600-50741000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:50725000-50746200	Weak transcription	Psoas Muscle	Psoas
17	chr10:50726800-50739600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:50727800-50741000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:50727800-50741000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:50727800-50741000	Strong transcription	Adipose Nuclei	Adipose
21	chr10:50727800-50741200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:50728200-50741000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr10:50728200-50741400	Strong transcription	HSMM	muscle
24	chr10:50728400-50738600	Strong transcription	Fetal Thymus	thymus
25	chr10:50728400-50741000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:50728400-50741000	Strong transcription	Placenta	Placenta
27	chr10:50728600-50736800	Strong transcription	Fetal Lung	lung
28	chr10:50728600-50736800	Weak transcription	Gastric	stomach
29	chr10:50728600-50740600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:50728600-50741400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr10:50728800-50741000	Strong transcription	Dnd41	blood
32	chr10:50728800-50742000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:50729000-50745800	Weak transcription	Stomach Mucosa	stomach
34	chr10:50729200-50738600	Strong transcription	Fetal Muscle Leg	muscle
35	chr10:50729200-50741400	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr10:50729200-50742400	Strong transcription	Hela-S3	cervix
37	chr10:50729600-50740000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:50730000-50737400	Weak transcription	Right Atrium	heart
39	chr10:50730000-50746400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:50730600-50741000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:50730600-50741200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:50730800-50741000	Strong transcription	Ovary	ovary
43	chr10:50730800-50741400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:50731000-50738600	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr10:50731000-50740400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:50731000-50741400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:50731200-50738200	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:50731200-50738400	Strong transcription	HSMMtube	muscle
49	chr10:50731200-50738600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr10:50731200-50740800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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