Variant report

Variant	rs7097122
Chromosome Location	chr10:50790831-50790832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1130028	0.86[EUR][1000 genomes]
rs11812473	0.84[EUR][1000 genomes]
rs11815156	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11819019	0.86[EUR][1000 genomes]
rs17010079	0.84[EUR][1000 genomes]
rs17719092	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775180	0.87[EUR][1000 genomes]
rs2228526	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2228527	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2228529	0.86[EUR][1000 genomes]
rs36079558	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253011	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4253028	0.89[EUR][1000 genomes]
rs4253042	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4253049	0.89[EUR][1000 genomes]
rs4253055	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4253101	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4253106	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4253121	0.87[EUR][1000 genomes]
rs4253165	0.87[EUR][1000 genomes]
rs4253166	0.87[EUR][1000 genomes]
rs4253193	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs56164647	0.86[EUR][1000 genomes]
rs58002245	0.87[EUR][1000 genomes]
rs58711755	0.89[EUR][1000 genomes]
rs58912975	0.84[EUR][1000 genomes]
rs59898389	0.89[EUR][1000 genomes]
rs61846612	0.89[EUR][1000 genomes]
rs61846615	0.89[EUR][1000 genomes]
rs61846616	0.90[EUR][1000 genomes]
rs61846617	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846618	0.90[EUR][1000 genomes]
rs61846620	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846637	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850971	0.84[EUR][1000 genomes]
rs61850976	0.85[EUR][1000 genomes]
rs7067651	0.82[EUR][1000 genomes]
rs7073830	0.87[EUR][1000 genomes]
rs7093098	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097866	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7909222	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920256	0.87[EUR][1000 genomes]
rs971667	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50781200-50792000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:50787800-50793000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:50787800-50793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:50787800-50793000	Weak transcription	NHEK	skin
5	chr10:50788000-50793000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:50788200-50793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:50788400-50793200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:50790800-50793000	Weak transcription	Osteobl	bone

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