Variant report
| Variant | rs7099373 |
|---|---|
| Chromosome Location | chr10:25964505-25964506 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10764579 | 0.87[EUR][1000 genomes] |
| rs10828844 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10828845 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10828846 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10828847 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10828848 | 0.87[EUR][1000 genomes] |
| rs10828849 | 0.87[EUR][1000 genomes] |
| rs11014679 | 0.87[EUR][1000 genomes] |
| rs16926240 | 0.95[ASN][1000 genomes] |
| rs16926262 | 0.90[ASN][1000 genomes] |
| rs16926264 | 0.90[ASN][1000 genomes] |
| rs17737307 | 0.85[ASN][1000 genomes] |
| rs2290167 | 0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[EUR][1000 genomes] |
| rs2367979 | 0.89[ASN][1000 genomes] |
| rs4749059 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55752620 | 0.95[ASN][1000 genomes] |
| rs61613087 | 0.95[ASN][1000 genomes] |
| rs61846904 | 0.95[ASN][1000 genomes] |
| rs61846907 | 0.95[ASN][1000 genomes] |
| rs61846908 | 0.90[ASN][1000 genomes] |
| rs62000980 | 0.88[ASN][1000 genomes] |
| rs6482509 | 0.95[ASN][1000 genomes] |
| rs6482511 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7076933 | 0.95[ASN][1000 genomes] |
| rs7080019 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7098875 | 0.95[ASN][1000 genomes] |
| rs72796368 | 0.93[ASN][1000 genomes] |
| rs72796380 | 0.93[ASN][1000 genomes] |
| rs73610338 | 0.90[ASN][1000 genomes] |
| rs7902742 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7916640 | 0.87[ASN][1000 genomes] |
| rs9664692 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044482 | chr10:25889919-25977270 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25962800-25993600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
